Test collect_derivatives function

[tsalo]

Closes none.

To do

• Use path to ds000005 subdataset (pending [DATALAD] Added subdataset #28).
• Fix up tests.
• Drop functional entities from anatomical transform queries.
• Should we find BOLD files in other requested output spaces?
• Should we add a parameter for the IO spec JSON?
  • The reason I think this might be useful is that, if we want nipost workflows to be chainable, users may wish to run a workflow on derivatives from something other than fMRIPrep. For example, I might want to run fMRIPost-AROMA on BOLD data that have been run through another nipost (e.g., fMRIPost-tedana), and that workflow might not name its postprocessed BOLD files desc-preproc.
  • On the other hand, if we let the BIDS filters file and selected BOLD file entities override the IO spec entities, we'll have trouble ignoring functional run-specific entities (e.g., "task", "run") when grabbing anatomical files.

Changes proposed in this pull request

[codecov]

Codecov Report

Attention: Patch coverage is 24.13793% with 132 lines in your changes missing coverage. Please review.

Project coverage is 32.18%. Comparing base (a29b14e) to head (33b624a).
Report is 7 commits behind head on main.

Files	Patch %	Lines
src/fmripost_aroma/utils/bids.py	32.25%	58 Missing and 5 partials ⚠️
src/fmripost_aroma/workflows/base.py	8.69%	42 Missing ⚠️
src/fmripost_aroma/interfaces/confounds.py	27.27%	8 Missing ⚠️
src/fmripost_aroma/utils/utils.py	11.11%	8 Missing ⚠️
src/fmripost_aroma/cli/parser.py	0.00%	4 Missing ⚠️
src/fmripost_aroma/config.py	20.00%	4 Missing ⚠️
src/fmripost_aroma/cli/workflow.py	0.00%	2 Missing ⚠️
src/fmripost_aroma/cli/run.py	0.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main      #29      +/-   ##
==========================================
+ Coverage   31.75%   32.18%   +0.42%     
==========================================
  Files          24       25       +1     
  Lines        2028     2116      +88     
  Branches      298      330      +32     
==========================================
+ Hits          644      681      +37     
- Misses       1374     1416      +42     
- Partials       10       19       +9     

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