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Merge pull request #263 from jhlegarreta/DocumentClassWithInit #229

Merge pull request #263 from jhlegarreta/DocumentClassWithInit

Merge pull request #263 from jhlegarreta/DocumentClassWithInit #229

Workflow file for this run

name: Unit and integration tests
on:
push:
branches:
- main
- maint/*
pull_request:
branches:
- main
- maint/*
# Allow job to be triggered manually from GitHub interface
workflow_dispatch:
defaults:
run:
shell: bash
# Force tox and pytest to use color
env:
FORCE_COLOR: true
TEST_DATA_HOME: /home/runner/eddymotion-tests/
ITK_GLOBAL_DEFAULT_NUMBER_OF_THREADS: 4
ANTSPATH: /usr/share/miniconda/bin/
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
permissions:
contents: read
jobs:
stable:
# Unit tests only on Linux/Python 3.12
runs-on: 'ubuntu-latest'
steps:
- uses: actions/checkout@v4
with:
submodules: recursive
fetch-depth: 0
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: '3.12'
- name: Install ANTs
run: |
conda install -c conda-forge ants=2.5
- name: Install datalad
run: |
python -m pip install datalad-installer
datalad-installer --sudo ok git-annex
python -m pip install datalad datalad-osf
datalad wtf
- uses: actions/cache/restore@v4
with:
path: /home/runner/eddymotion-tests/
key: data-v0
- name: Get test data with DataLad
run: |
if [[ ! -d "${TEST_DATA_HOME}" ]]; then
datalad install -rg --source=https://gin.g-node.org/nipreps-data/tests-eddymotion.git ${TEST_DATA_HOME}
else
cd ${TEST_DATA_HOME}
datalad update --merge -r .
datalad get -r -J4 *
fi
- uses: actions/cache/save@v4
with:
path: /home/runner/eddymotion-tests/
key: data-v0
- name: Install tox
run: |
python -m pip install --upgrade pip
python -m pip install tox tox-gh-actions
- name: Show tox config
run: tox c
- name: Run tox
run: |
export PATH=$ANTSPATH:$PATH
tox -v --exit-and-dump-after 1200
- uses: codecov/codecov-action@v4
if: ${{ always() }}
with:
files: cov.xml
token: ${{ secrets.CODECOV_TOKEN }}