Software Requirements

Here is a list of software required to run this code:

• AFNI: we use AFNI for extracting representative time-series from NIFI files

• Primary Python Libraries

  • sikit-learn: we use this library to generate Laplacian Eigenmaps and T-SNE embeddings
  • umap-learn: we use this library to generate UMAP embeddings
  • scikit-dimension: we use this library to estimate intrinsic dimension
  • holoviz tools: we use this set of libraries to generate dynamic 2D plots and dashboards
  • plotly: we use this library to generate dynamic 3D scatter plots.
  • seaborn: we use this library to generate statistical plots
  • statannotations: we use this library to statistically annotate plots generated with seaborn
  • networkx: we use this library to create and visualize network graphs.

Additionally, to generate the 3D brain views in Figure 01, you will need to install:

• MATLAB
• SPM
• CONN