Tests

Rtransparent Publication Ingestion #117

	name: Tests

	on:
	push:
	branches: [ '*' ]
	pull_request:
	branches: [ main ]

	jobs:
	pre-commit:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v3
	- uses: actions/setup-python@v4
	with:
	python-version: '3.11'
	- name: Install dependencies for pre-commit
	run: \|
	pip install --upgrade pip
	pip install .[ci] # Or include 'alembic' directly if needed
	- uses: pre-commit/[email protected]

	pytest:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: [3.11]

	steps:
	- name: Checkout repository
	uses: actions/checkout@v3

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install dependencies
	run: \|
	pip install uv
	pip install .[ci]

	- name: Start Docker stack
	run: \|
	cp .mockenv .env
	docker compose -f .docker/postgres-compose.yaml up -d

	- name: Run Alembic check
	run: \|
	alembic check
	if [ $? -ne 0 ]; then
	echo "Error: Uncommitted Alembic upgrade operations detected."
	echo "Please generate and commit your migration scripts."
	exit 1
	fi


	- name: Run tests with coverage
	run: \|
	coverage run -m pytest -s tests
	coverage report
	coverage xml

	- name: Stop Docker stack
	if: always()
	run: docker compose -f .docker/postgres-compose.yaml down

	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v3
	with:
	file: coverage.xml

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