Attempt to add to pip

MANIFEST.in

@@ -0,0 +1,5 @@
+# Include the README
+include *.md
+
+# Include the license file
+include LICENSE

compile_pypi.sh

@@ -0,0 +1,5 @@
+#!/usr/bin/env bash
+rm -rf build dist favites_lite.egg-*
+python3 setup.py sdist
+python3 setup.py bdist_wheel --universal
+twine upload dist/*

global.json

@@ -1,5 +1,5 @@
 {
-    "VERSION": "1.0.0",
+    "VERSION": "1.0.1",
     "CONFIG_KEYS": ["Contact Network", "Transmission Network", "Sample Times", "Viral Phylogeny (Transmissions)", "Viral Phylogeny (Seeds)", "Mutation Rates", "Ancestral Sequence", "Sequence Evolution"],
     "DESC": {
         "Contact Network": "The <b style='color:red;'>Contact Network</b> graph model describes all social interactions:<ul><li>Nodes represent individuals in the population</li><li>Edges represent all interactions across which the pathogen can transmit</li><li>Currently, FAVITES-Lite only supports static (i.e., unchanging) contact networks</li></ul>",

setup.py

@@ -0,0 +1,19 @@
+from json import load
+from setuptools import setup, find_packages
+VERSION = load(open('global.json'))['VERSION']
+
+setup(
+        name='favites_lite',    # This is the name of your PyPI-package.
+        version=VERSION,    # Update the version number for new releases
+        scripts=['favites_lite.py',], # The name of your script, and also the command you'll be using for calling it
+        description='FAVITES-Lite: A lightweight framework for viral transmission and evolution simulation',
+        long_description='FAVITES-Lite: A lightweight framework for viral transmission and evolution simulation',
+        long_description_content_type='text/plain',
+        url='https://github.com/niemasd/FAVITES-Lite',
+        author='Niema Moshiri',
+        author_email='[email protected]',
+        packages=find_packages(exclude=['.devcontainer', '.github', '.tests', 'example', 'scripts', 'webapp']),
+        zip_safe = False,
+        install_requires=['numpy', 'scipy', 'treesap', 'treeswift'],
+        include_package_data=True
+)