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Test new fix
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sofstam committed Jan 9, 2025
1 parent a22afb2 commit 6843bdf
Showing 1 changed file with 5 additions and 5 deletions.
10 changes: 5 additions & 5 deletions .github/workflows/download_pipeline.yml
Original file line number Diff line number Diff line change
Expand Up @@ -29,7 +29,7 @@ env:

jobs:
configure:
runs-on: ubuntu-latest{% raw %}
runs-on: ubuntu-latest
outputs:
REPO_LOWERCASE: ${{ steps.get_repo_properties.outputs.REPO_LOWERCASE }}
REPOTITLE_LOWERCASE: ${{ steps.get_repo_properties.outputs.REPOTITLE_LOWERCASE }}
Expand All @@ -40,7 +40,7 @@ jobs:
run: |
echo "REPO_LOWERCASE=${GITHUB_REPOSITORY,,}" >> "$GITHUB_OUTPUT"
echo "REPOTITLE_LOWERCASE=$(basename ${GITHUB_REPOSITORY,,})" >> "$GITHUB_OUTPUT"
echo "REPO_BRANCH=${{ github.event.inputs.testbranch || 'dev' }}" >> "$GITHUB_OUTPUT{% endraw %}"
echo "REPO_BRANCH=${{ github.event.inputs.testbranch || 'dev' }}" >> "$GITHUB_OUTPUT"
download:
runs-on: ubuntu-latest
Expand Down Expand Up @@ -73,7 +73,7 @@ jobs:
- name: Download the pipeline
env:
NXF_SINGULARITY_CACHEDIR: ./singularity_container_images{% raw %}
NXF_SINGULARITY_CACHEDIR: ./singularity_container_images
run: |
nf-core pipelines download ${{ needs.configure.outputs.REPO_LOWERCASE }} \
--revision ${{ needs.configure.outputs.REPO_BRANCH }} \
Expand All @@ -85,7 +85,7 @@ jobs:
--download-configuration 'yes'
- name: Inspect download
run: tree ./${{ needs.configure.outputs.REPOTITLE_LOWERCASE }}{% endraw %}{% if test_config %}{% raw %}
run: tree ./${{ needs.configure.outputs.REPOTITLE_LOWERCASE }}

- name: Inspect container images
run: tree ./singularity_container_images | tee ./container_initial
Expand Down Expand Up @@ -131,4 +131,4 @@ jobs:
exit 1
else
echo "The pipeline can be downloaded successfully!"
fi{% endraw %}{% endif %}
fi

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