Update modules

nf-core · Mar 13, 2024 · ec19912 · ec19912
1 parent 0e70651
commit ec19912
Show file tree

Hide file tree

Showing 17 changed files with 544 additions and 32 deletions.
diff --git a/modules.json b/modules.json
@@ -22,7 +22,7 @@
                     },
                     "cellrangerarc/count": {
                         "branch": "master",
-                        "git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
+                        "git_sha": "18e53e27cfeca5dbbfbeee675c05438dec68245f",
                         "installed_by": ["modules"]
                     },
                     "cellrangerarc/mkgtf": {
@@ -42,7 +42,7 @@
                     },
                     "gffread": {
                         "branch": "master",
-                        "git_sha": "575e1bc54b083fb15e7dd8b5fcc40bea60e8ce83",
+                        "git_sha": "b1b959609bda44341120aed1766329909f54b8d0",
                         "installed_by": ["modules"]
                     },
                     "gunzip": {
@@ -52,12 +52,12 @@
                     },
                     "kallistobustools/count": {
                         "branch": "master",
-                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
+                        "git_sha": "de8215983defba48cd81961d620a9e844f11c7e7",
                         "installed_by": ["modules"]
                     },
                     "kallistobustools/ref": {
                         "branch": "master",
-                        "git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
+                        "git_sha": "de8215983defba48cd81961d620a9e844f11c7e7",
                         "installed_by": ["modules"]
                     },
                     "multiqc": {

diff --git a/modules/nf-core/cellrangerarc/count/main.nf b/modules/nf-core/cellrangerarc/count/main.nf
diff --git a/modules/nf-core/gffread/tests/main.nf.test b/modules/nf-core/gffread/tests/main.nf.test
diff --git a/modules/nf-core/gffread/tests/nextflow-gff3.config b/modules/nf-core/gffread/tests/nextflow-gff3.config
diff --git a/modules/nf-core/kallistobustools/count/environment.yml b/modules/nf-core/kallistobustools/count/environment.yml
diff --git a/modules/nf-core/kallistobustools/count/main.nf b/modules/nf-core/kallistobustools/count/main.nf
diff --git a/modules/nf-core/kallistobustools/count/meta.yml b/modules/nf-core/kallistobustools/count/meta.yml
diff --git a/modules/nf-core/kallistobustools/count/tests/main.nf.test b/modules/nf-core/kallistobustools/count/tests/main.nf.test
diff --git a/modules/nf-core/kallistobustools/count/tests/main.nf.test.snap b/modules/nf-core/kallistobustools/count/tests/main.nf.test.snap
diff --git a/modules/nf-core/kallistobustools/count/tests/nextflow.config b/modules/nf-core/kallistobustools/count/tests/nextflow.config
diff --git a/modules/nf-core/kallistobustools/count/tests/tags.yml b/modules/nf-core/kallistobustools/count/tests/tags.yml
diff --git a/modules/nf-core/kallistobustools/ref/environment.yml b/modules/nf-core/kallistobustools/ref/environment.yml