Release Sarek 3.3.0 - Rapaselet · nf-core/sarek

What's Changed

FEAT: Mutect2 multi sample subworkflow by @berguner in #1013
FEAT: Sentieon DNAseq workflow by @asp8200 in #994. #1002. #1007. #1123. #1044.
FEAT: Greatly improve tower.yml file by @maxulysse in #1197
FEAT: Use annotation-cache and update VEP to v110 by @maxulysse in #1122
FEAT: Added nf-validation for samplesheet validation by @mirpedrol in #1059
Update of nf-core modules. #1180. #1160. #1174. #1227. #1224
Improved docs. #1163. #1138 (@rhagenson), #1192 (@JohannesKersting). #1222 (@adamrtalbot). #1166. #1179 (@robsyme). #1183.
snpeff_db parameter validation by @maxulysse in #1143
FIX: Exome flag for Manta by @maxulysse in #1149
FIX: Move all vep args from ext.args to params.vep_custom_args by @maxulysse in #1157
FIX: GenomicsDB bug with mismatched intervals, remove duplicated variants from VQSR vcfs, add VQSR CI test by @FriederikeHanssen in #1173
FIX: Improved workflows for GHA by @adamrtalbot in #1200
FIX: Remove Nextflow caching for CI-tests by @emiller88 in #1202
FIX: Remove singularity tests from GHA by @maxulysse in #1218
FIX: Better coverage for all tests by @maxulysse in #1225, #1216
FIX: GVCF-files are published also when all intervals are processed at once by @FriederikeHanssen in #1172
FIX: Don’t pass in intervals file to control-freec for WGS by @FriederikeHanssen in #1214
FIX: getpileupsummary should not run if no germline resource is provided by @FriederikeHanssen in #1171

Full Changelog: 3.2.3...3.3.0