Reverting changes in get_orthologs

nf-core · May 7, 2024 · f1fe384 · f1fe384
1 parent 3cad588
commit f1fe384
Showing 1 changed file with 14 additions and 16 deletions.
diff --git a/subworkflows/local/get_orthologs.nf b/subworkflows/local/get_orthologs.nf
@@ -131,24 +131,22 @@ workflow GET_ORTHOLOGS {
         ch_versions
             .mix(FETCH_INSPECTOR_GROUP_ONLINE.out.versions)
             .set { ch_versions }
-        // TODO check that this is correct
-        if (params.local_databases) {
-            FETCH_EGGNOG_GROUP_LOCAL (
-                ch_query,
-                params.eggnog_path,
-                params.eggnog_idmap_path
-            )
-
-            ch_orthogroups
-                .mix(FETCH_EGGNOG_GROUP_LOCAL.out.eggnog_group)
-                .set { ch_orthogroups }
+
+        FETCH_EGGNOG_GROUP_LOCAL (
+            ch_query,
+            params.eggnog_path,
+            params.eggnog_idmap_path
+        )
 
-            ch_versions
-                .mix(FETCH_EGGNOG_GROUP_LOCAL.out.versions)
-                .set { ch_versions }
-        }
+        ch_orthogroups
+            .mix(FETCH_EGGNOG_GROUP_LOCAL.out.eggnog_group)
+            .set { ch_orthogroups }
 
-    } else { // online/local separation is used
+        ch_versions
+            .mix(FETCH_EGGNOG_GROUP_LOCAL.out.versions)
+            .set { ch_versions }
+    } 
+    else { // online/local separation is used
         // local only
         if (params.local_databases) {
             if (!params.skip_oma) {