Merge branch 'updates' of https://github.com/JoseEspinosa/reportho in…

…to updates
nf-core · May 9, 2024 · 36d3769 · 36d3769
2 parents 0f1ef99 + 2f2eaf0
commit 36d3769
Showing 1 changed file with 0 additions and 2 deletions.
diff --git a/bin/fetch_oma_by_sequence.py b/bin/fetch_oma_by_sequence.py
@@ -15,7 +15,6 @@ def main() -> None:
         raise ValueError("Not enough arguments. Usage: fetch_oma_by_sequence.py <fasta> <id_out> <taxid_out> <exact_out>")
 
     seqs = SeqIO.parse(sys.argv[1], "fasta")
-
     seq = next(seqs).seq
 
     # Only use the first sequence, ignore all others
@@ -54,7 +53,6 @@ def main() -> None:
                 raise ValueError("Isoform not found")
 
     print(entry["canonicalid"], file=open(sys.argv[2], "w"))
-
     print(entry["species"]["taxon_id"], file=open(sys.argv[3], "w"))