Merge pull request #56 from nf-core/fix-read-processing-optional-channel

Correct read processing subworkflow optional output channel
nf-core · Jun 6, 2024 · c9fa9de · c9fa9de
2 parents 67275f5 + e85c081
commit c9fa9de
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/workflows/targeted.nf b/workflows/targeted.nf
@@ -170,8 +170,8 @@ workflow TARGETED {
 
     } else {
 
-        ch_process_dna_tumor_out = ch_inputs.map { meta -> [meta, []] }
-        ch_process_dna_normal_out = ch_inputs.map { meta -> [meta, []] }
+        ch_process_dna_tumor_out = ch_inputs.map { meta -> [meta, [], []] }
+        ch_process_dna_normal_out = ch_inputs.map { meta -> [meta, [], []] }
 
     }
 

diff --git a/workflows/wgts.nf b/workflows/wgts.nf
@@ -176,8 +176,8 @@ workflow WGTS {
 
     } else {
 
-        ch_process_dna_tumor_out = ch_inputs.map { meta -> [meta, []] }
-        ch_process_dna_normal_out = ch_inputs.map { meta -> [meta, []] }
+        ch_process_dna_tumor_out = ch_inputs.map { meta -> [meta, [], []] }
+        ch_process_dna_normal_out = ch_inputs.map { meta -> [meta, [], []] }
 
     }