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PR for release 1.3.0 #75

Merged
merged 58 commits into from
Aug 27, 2024
Merged

PR for release 1.3.0 #75

merged 58 commits into from
Aug 27, 2024

Commits on Dec 20, 2023

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Commits on Jan 18, 2024

  1. Better editorconfig

    <!--
    # nf-core/nanostring pull request
    
    Many thanks for contributing to nf-core/nanostring!
    
    Please fill in the appropriate checklist below (delete whatever is not relevant).
    These are the most common things requested on pull requests (PRs).
    
    Remember that PRs should be made against the dev branch, unless you're preparing a pipeline release.
    
    Learn more about contributing: [CONTRIBUTING.md](https://github.com/nf-core/nanostring/tree/master/.github/CONTRIBUTING.md)
    -->
    
    ## PR checklist
    
    - [ ] This comment contains a description of changes (with reason).
    - [ ] If you've fixed a bug or added code that should be tested, add tests!
    - [ ] If you've added a new tool - have you followed the pipeline conventions in the [contribution docs](https://github.com/nf-core/nanostring/tree/master/.github/CONTRIBUTING.md)
    - [ ] If necessary, also make a PR on the nf-core/nanostring _branch_ on the [nf-core/test-datasets](https://github.com/nf-core/test-datasets) repository.
    - [ ] Make sure your code lints (`nf-core lint`).
    - [ ] Ensure the test suite passes (`nextflow run . -profile test,docker --outdir <OUTDIR>`).
    - [ ] Check for unexpected warnings in debug mode (`nextflow run . -profile debug,test,docker --outdir <OUTDIR>`).
    - [ ] Usage Documentation in `docs/usage.md` is updated.
    - [ ] Output Documentation in `docs/output.md` is updated.
    - [ ] `CHANGELOG.md` is updated.
    - [ ] `README.md` is updated (including new tool citations and authors/contributors).
    apeltzer committed Jan 18, 2024
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  2. Merge pull request #60 from nf-core/bump-version

    Bump Dev to 1.2.2dev
    christopher-mohr authored Jan 18, 2024
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Commits on Jan 29, 2024

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Commits on Feb 7, 2024

  1. Issue #62: CREATE_GENE_HEATMAP extracts gene names from normalized co…

    …unts instead of annotated counts
    KoljaBecker committed Feb 7, 2024
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Commits on Feb 13, 2024

  1. Merge branch 'TEMPLATE' of https://github.com/nf-core/nanostring into…

    … merging-template-updates-2-12
    christopher-mohr committed Feb 13, 2024
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  3. add correct logos

    christopher-mohr committed Feb 13, 2024
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  4. remove fastqc

    christopher-mohr committed Feb 13, 2024
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  5. change logos again

    christopher-mohr committed Feb 13, 2024
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Commits on Feb 14, 2024

  1. run pre-commit

    christopher-mohr committed Feb 14, 2024
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  4. Merge pull request #66 from christopher-mohr/merging-template-updates…

    …-2-12
    
    Merging template updates for 2.12
    christopher-mohr authored Feb 14, 2024
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  5. Upgrade multiqc

    apeltzer committed Feb 14, 2024
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Commits on Feb 15, 2024

  1. Merge pull request #67 from nf-core/bump-modules

    Upgrade multiqc
    christopher-mohr authored Feb 15, 2024
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Commits on Feb 20, 2024

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Commits on Feb 22, 2024

  1. Merge pull request #65 from KaBrrrp/dev

    Issue #62: CREATE_GENE_HEATMAP
    apeltzer authored Feb 22, 2024
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Commits on Feb 29, 2024

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Commits on Apr 15, 2024

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Commits on Apr 16, 2024

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  3. add citation info

    christopher-mohr committed Apr 16, 2024
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Commits on Apr 17, 2024

  1. update documentation

    christopher-mohr committed Apr 17, 2024
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  2. more docs updates

    christopher-mohr committed Apr 17, 2024
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  3. update CHANGELOG

    christopher-mohr committed Apr 17, 2024
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Commits on May 8, 2024

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Commits on May 9, 2024

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Commits on Jun 25, 2024

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  2. Remove fastqc

    apeltzer committed Jun 25, 2024
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  3. Fix linting issue

    apeltzer committed Jun 25, 2024
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  4. Update multiqc

    apeltzer committed Jun 25, 2024
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  5. Improve changelog

    apeltzer committed Jun 25, 2024
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Commits on Aug 12, 2024

  1. Update modules

    apeltzer committed Aug 12, 2024
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  2. Fix updates

    apeltzer committed Aug 12, 2024
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Commits on Aug 13, 2024

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Commits on Aug 16, 2024

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  2. downgrade MultiQC

    christopher-mohr committed Aug 16, 2024
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  3. update CHANGELOG

    christopher-mohr committed Aug 16, 2024
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  4. Merge pull request #74 from nf-core/update-modules

    Update Modules & Template Merge
    apeltzer authored Aug 16, 2024
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Commits on Aug 20, 2024

  1. Bump version

    apeltzer committed Aug 20, 2024
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  2. Update Multiqc to 1.24

    apeltzer committed Aug 20, 2024
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Commits on Aug 21, 2024

  1. Update to multiqc 1.24.1

    apeltzer committed Aug 21, 2024
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  2. Merge pull request #76 from nf-core/bump-pr

    Bump version
    apeltzer authored Aug 21, 2024
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Commits on Aug 22, 2024

  1. Add date

    apeltzer committed Aug 22, 2024
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Commits on Aug 26, 2024

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Commits on Aug 27, 2024

  1. Add Nanostring AI document

    apeltzer committed Aug 27, 2024
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  3. Date++

    apeltzer committed Aug 27, 2024
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  4. Update CHANGELOG.md

    Co-authored-by: Christopher Mohr <[email protected]>
    apeltzer and christopher-mohr authored Aug 27, 2024
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  5. Merge pull request #78 from nf-core/add-nanostring-ai

    Add Nanostring AI document
    apeltzer authored Aug 27, 2024
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