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mag 3.0.0 - Magenta Magpie
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@jfy133 jfy133 released this 13 May 13:38
· 363 commits to master since this release
3.0.0
a50117e
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Caution

This release contains a potentially 'breaking change' for some users. The pipeline no longer directly accepts FASTQ files via --input.
You must use a samplesheet and specify the FASTQs there.

Added

Changed

  • #599 - Update to nf-core v2.13.1 TEMPLATE (by @jfy133)
  • #614 - Update to nf-core v2.14.1 TEMPLATE (by @jfy133)

Fixed

  • #606 - Prevent pipeline crash when premade mashdb given to or no alignments found with GTDB-TK_CLASSIFYWF (reported by @cedwardson4, fix by @jfy133)

Deprecated

  • #599 - Direct reads input (--input 'sample_{R1,R2}.fastq.gz') is no longer supported, all input must come via samplesheets (by @jfy133)

Contributors

cedwardson4 and jfy133
Assets 2
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