mag 2.5.0 - Aquamarine Kangaroo

Added

• #504 - New parameters --busco_db, --kraken2_db, and --centrifuge_db now support directory input of a pre-uncompressed database archive directory (by @gregorysprenger).

Changed

• #511 - Update to nf-core 2.10 TEMPLATE (by @jfy133)
• #504 - --save_busco_reference is now replaced by --save_busco_db (by @gregorysprenger).

Fixed

• #514 - Fix missing CONCOCT files in downstream output (reported by @maxibor, fix by @jfy133)
• #515 - Fix overwriting of GUNC output directories when running with domain classification (reported by @maxibor, fix by @jfy133)
• #516 - Fix edge-case bug where MEGAHIT re-uses previous work directory on resume and fails (reported by @husensofteng, fix by @prototaxites)
• #520 - Fix missing Tiara output files (fix by @jfy133)
• #522 - Fix 'nulls' in depth plot PNG files (fix by @jfy133)

Deprecated

• #504 - --busco_reference, --busco_download_path, --save_busco_reference parameters have been deprecated and replaced with new parameters (by @gregorysprenger).