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Issues list

Mapping statistics STAR-HTSEQ modules in subworkflow and modules - proof of concept enhancement Improvement for existing functionality
#96 opened Dec 7, 2023 by blazejszczerba
Are there plans to port the workflow to DSL2?
#88 opened Jun 7, 2023 by scontente
5
Create STAR_HTSEQ subworkflow + HTSEQ module enhancement Improvement for existing functionality
#75 opened Mar 29, 2023 by pkoscielnybio
@pkoscielnybio
rethink check_replicates process for DSL2 enhancement Improvement for existing functionality
#73 opened Mar 29, 2023 by bozmik
'Parent' is hard-coded in the replace_attribute_host_genome_gff_star_salmon process bug Something isn't working
#70 opened Mar 29, 2023 by bozmik
Add a module for count_total_reads and count_total_read_pairs processes enhancement Improvement for existing functionality
#66 opened Mar 29, 2023 by DorotaPikulArdigen
@DorotaPikulArdigen
create a module for generating bacterial transcriptome fasta file enhancement Improvement for existing functionality
#64 opened Mar 28, 2023 by bozmik
@bozmik
Combine host annotations with quantification results enhancement Improvement for existing functionality
#57 opened Mar 28, 2023 by DorotaPikulArdigen
@DorotaPikulArdigen
A new module to combine the host ambig and unique counts enhancement Improvement for existing functionality
#48 opened Mar 27, 2023 by pkoscielnybio
@pkoscielnybio
Update tximport_host process from DSL1 process to DSL2 module enhancement Improvement for existing functionality
#44 opened Mar 27, 2023 by opetryk
@opetryk
1
Samplesheet for AWS megatests should be stored in test-datasets repository bug Something isn't working
#39 opened Mar 15, 2023 by FriederikeHanssen
4 tasks
seaborn version incompats. enhancement Improvement for existing functionality
#28 opened Feb 1, 2022 by rafalcode
feature names hardcoded in extract_annotations_from_gff.py bug Something isn't working
#25 opened Aug 26, 2021 by mohammedkhalfan
1
Output separate coverage files for host and pathogen enhancement Improvement for existing functionality
#17 opened May 31, 2021 by gprezza
1
Pipeline needs updating to the latest template version enhancement Improvement for existing functionality
#14 opened May 25, 2021 by ewels
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