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Samplesheet Validator #61

Samplesheet Validator

Samplesheet Validator #61

GitHub Actions / JUnit Test Report failed Aug 12, 2024 in 0s

1 tests run, 0 passed, 0 skipped, 1 failed.

Annotations

Check failure on line 1 in nf

See this annotation in the file changed.

@github-actions github-actions / JUnit Test Report

nf.FQTK

Assertion failed: 

54 of 54 assertions failed
Raw output
Nextflow stdout:

WARN: Access to undefined parameter `monochromeLogs` -- Initialise it to a default value eg. `params.monochromeLogs = some_value`
Could not read parameters settings from JSON. groovy.json.JsonException: expecting '}' or ',' but got current char '"' with an int value of 34

The current character read is '"' with an int value of 34
expecting '}' or ',' but got current char '"' with an int value of 34
line number 38
index number 1625
                "downstream_pipeline": {
................^
ERROR ~ expecting '}' or ',' but got current char '"' with an int value of 34

The current character read is '"' with an int value of 34
expecting '}' or ',' but got current char '"' with an int value of 34
line number 38
index number 1625
                "downstream_pipeline": {
................^

 -- Check script '/home/runner/work/demultiplex/demultiplex/./workflows/../subworkflows/local/utils_nfcore_demultiplex_pipeline/../../nf-core/utils_nfvalidation_plugin/main.nf' at line: 57 or see '/home/runner/work/demultiplex/demultiplex/.nf-test/tests/6e04b3b46e4bc8d21ded11daff43a221/meta/nextflow.log' file for more details
Nextflow stderr: