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14 Open 174 Closed
14 Open 174 Closed
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Issues list

Process NFCORE_CHIPSEQ:PREPARE_GENOME:GFFREAD declares 2 input channels but 1 were specified bug Something isn't working
#432 opened Nov 19, 2024 by ftabaro
Process NFCORE_CHIPSEQ:CHIPSEQ:FASTQ_ALIGN_BWA:BAM_SORT_STATS_SAMTOOLS:SAMTOOLS_SORT (SRR5627136_REP2_T1) terminated with an error exit status (1) bug Something isn't working
#431 opened Oct 22, 2024 by NicoleChant
Process NFCORE_CHIPSEQ:CHIPSEQ:MULTIQC terminated with an error exit status bug Something isn't working
#428 opened Oct 17, 2024 by Sungryong-Oh
Not a valid path value when provide genome by fasta and gtf in compressed gz format, and not providing genome index or gene bed bug Something isn't working
#427 opened Oct 16, 2024 by ljw20180420
1
Refactor local modules to use an conda environment yml file and not ping modules directly enhancement
#417 opened Oct 1, 2024 by JoseEspinosa 2.2
Move the KHMER_UNIQUEKMERS logic to prepare_genome enhancement
#416 opened Oct 1, 2024 by JoseEspinosa 2.2
Get rid of checksamplesheet.py and switch to nf-schema enhancement
#403 opened Jul 19, 2024 by JoseEspinosa 2.2
Add --only_step options enhancement
#337 opened Mar 8, 2023 by IStevant 2.2
Spike ins normalization enhancement
#321 opened Oct 28, 2022 by EmanuelSoda 2.2
12
Implementation of Nucleosome and Protein Occupancy analysis feature-request Request to add new functionality help wanted Extra attention is needed
#289 opened Jul 27, 2022 by snardeli 2.2
Find test dataset where PRESEQ doesn't fail enhancement
#276 opened May 9, 2022 by drpatelh 2.2
@JoseEspinosa
1
Output bigwigs with macs2 p-value signal for every base-pair feature-request Request to add new functionality
#251 opened Feb 3, 2022 by Al-Murphy 2.2
4
Merged biological replicates
#213 opened May 3, 2021 by ryanmboileau 2.2
Add IDR analysis feature-request Request to add new functionality
#87 opened May 30, 2019 by drpatelh 2.2
5
ProTip! Adding no:label will show everything without a label.