Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ENH: Add unaliased pango column to 21L focus build #37

Closed
corneliusroemer opened this issue Sep 4, 2022 · 1 comment
Closed

ENH: Add unaliased pango column to 21L focus build #37

corneliusroemer opened this issue Sep 4, 2022 · 1 comment
Assignees
Labels
enhancement New feature or request

Comments

@corneliusroemer
Copy link
Member

Context

Many aliases are popping up - confusing even me. Would be great to have also an unaliased column. This would allow for depth first sorting too - aliasing screws that up at the moment.

I'd keep BA unexpanded, so BA.2.75 -> BA.2.75, but BL.1 -> BA.2.75.1.1

Description

Should be possible to be added pretty easily by a small Python script in the workflow.

Can use pango_aliasor package.

Would make nextstrain/nextclade#984 less pressing

@corneliusroemer
Copy link
Member Author

Can be tested on nextclade.dev with the BA.2 dataset (click on change and scroll down)
image

Particularly useful is sort - which will now sort so that aliased children are next to their unaliased parents!

Repository owner moved this from New to Done in Nextstrain planning (archived) Sep 9, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
enhancement New feature or request
Projects
No open projects
Development

No branches or pull requests

1 participant