Transmission Line Visualization Feature in Monkeypox Pipeline, Similar to the ncov Build

[AroobAlhumaidy]

Context

This feature request aims to enhance the understanding of monkeypox epidemiology and transmission patterns.

Description

Currently, in the ncov build of Nextstrain, when running the pipeline locally, the output JSON file includes a feature that displays the transmission lines between sequences from different countries. I would like to propose extending this feature to the monkeypox pipeline as well.

By including the transmission line visualization in the monkeypox pipeline, researchers and public health professionals can gain valuable insights into the spread and transmission dynamics of monkeypox. This visualization will help track the movement of the virus across geographical regions and identify potential sources of outbreaks.

Implementing this feature in the monkeypox pipeline will contribute to a better understanding of the epidemiology of monkeypox and support more effective disease surveillance and control measures.

Thank you for considering this feature request.