python2 vdb/download.py -db vdb -v coronavirus --fstem coronavirus --resolve_method choose_genbank
- Download sequences
- Select genome length >= 5000
- Download as Genome Fasta
- Set Custom Format Fields to 0: GenBank Accession, 1: Strain Name, 2: Segment, 3: Date, 4: Host, 5: Country, 6: Subtype, 7: Virus Species
- Move downloaded sequences to
fauna/data - Upload to vdb database
python2 vdb/coronavirus_upload.py -db vdb -v coronavirus --source genbank --locus genome --fname GenomicFastaResults.fasta