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funannotate v0.5.4

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@nextgenusfs nextgenusfs released this 23 Dec 21:41
· 1048 commits to master since this release
  • update to tblastn/exonerate protein mapping for better speed and more thorough searches
  • added --ploidy option to funannotate predict which controls the max number of hits for tblastn filter to pass to exonerate, which is set at 2 x ploidy. You should likely only increase this if your assembly is more than haploid - so perhaps newer assemblies with nanopore/pacbio may be able to resolve diploid chromosomes. It shouldn't have negative consequences in increase --ploidy, but will increase run time for protein mapping.
  • happy holidays...