funannotate v0.5.3

• re-organize output so that temporary folders are created in the "final" resting place and not in the current directory
• modification of the multiprocessing function to include a simple progress percentage output
• bug fixes in funannotate compare and the orthology dN/dS output hanging when the dN/dS calculation failed
• modification to the logging to capture STDERR/STDOUT from many external tools into the log file, hopefully this will result in catching more errors than piping them to os.devnull
• bug fix in funannotate annotate where output folders not being created if the input was GFF, proteins, and fasta.
• made it a requirement to pass --species argument to funannotate annotate if you do not pass in a GenBank file. This is to prevent downstream problems in funannotate compare with how the scripts name the genome/isolates.
• made a FAQ section in the docs that includes how to manually adjust gene models using the included tools
• all internal tests passed, however guaranteed there are more bugs. please let me know when you find them.