Skip to content

Commit

Permalink
#7
Browse files Browse the repository at this point in the history
  • Loading branch information
sapetnioc committed Jun 18, 2024
1 parent 0c9f580 commit 20fb987
Show file tree
Hide file tree
Showing 27 changed files with 422 additions and 348 deletions.
19 changes: 8 additions & 11 deletions recipes/soma-forge/src/recipes/anatomist.yaml
Original file line number Diff line number Diff line change
@@ -1,20 +1,17 @@
package:
name: anatomist

components:
- anatomist-free
- anatomist-gpl
soma-forge:
components:
- anatomist-free
- anatomist-gpl

internal-dependencies:
- soma
internal-dependencies:
- soma

type: compiled

requirements:
build:
- ${{ compiler('cxx') }}
- libstdcxx-devel_linux-64
- cmake
- make

run:
- qwt
- matplotlib
Expand Down
16 changes: 8 additions & 8 deletions recipes/soma-forge/src/recipes/bioprocessing.yaml
Original file line number Diff line number Diff line change
@@ -1,16 +1,16 @@
package:
name: bioprocessing

components:
- bioprocessing
soma-forge:
components:
- bioprocessing

internal-dependencies:
- soma
- anatomist
internal-dependencies:
- soma
- anatomist

requirements:
build:
- ${{ compiler('cxx') }}
type: compiled

requirements:
run:
- scikit-learn
17 changes: 8 additions & 9 deletions recipes/soma-forge/src/recipes/brainrat.yaml
Original file line number Diff line number Diff line change
@@ -1,14 +1,13 @@
package:
name: brainrat

components:
- brainrat-private
- brainrat-gpl
soma-forge:
components:
- brainrat-private
- brainrat-gpl

internal-dependencies:
- soma
- anatomist
internal-dependencies:
- soma
- anatomist

requirements:
build:
- ${{ compiler('cxx') }}
type: compiled
15 changes: 9 additions & 6 deletions recipes/soma-forge/src/recipes/brainvisa.yaml
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
package:
name: brainvisa

internal-dependencies:
- brainrat
- disco
- highres-cortex
- morphologist
- primatologist
soma-forge:
internal-dependencies:
- brainrat
- disco
- highres-cortex
- morphologist
- primatologist

type: virtual
11 changes: 7 additions & 4 deletions recipes/soma-forge/src/recipes/capsul.yaml
Original file line number Diff line number Diff line change
@@ -1,11 +1,14 @@
package:
name: capsul

components:
- capsul
soma-forge:
components:
- capsul

internal-dependencies:
- soma-python
internal-dependencies:
- soma-python

type: interpreted

requirements:
run:
Expand Down
13 changes: 8 additions & 5 deletions recipes/soma-forge/src/recipes/cati-deidentification.yaml
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
package:
name: cati-deidentification

components:
- deidentification
soma-forge:
components:
- deidentification

internal-dependencies:
- soma
- anatomist
type: interpreted

internal-dependencies:
- soma
- anatomist
15 changes: 7 additions & 8 deletions recipes/soma-forge/src/recipes/cati-longitudinal.yaml
Original file line number Diff line number Diff line change
@@ -1,13 +1,12 @@
package:
name: cati-longitudinal

components:
- longitudinal_pipelines
soma-forge:
components:
- longitudinal_pipelines

internal-dependencies:
- soma
- anatomist
internal-dependencies:
- soma
- anatomist

requirements:
build:
- ${{ compiler('cxx') }}
type: compiled
13 changes: 8 additions & 5 deletions recipes/soma-forge/src/recipes/cati-rsfmri.yaml
Original file line number Diff line number Diff line change
@@ -1,9 +1,12 @@
package:
name: cati-rsfmri

components:
- rsfmri
soma-forge:
components:
- rsfmri

internal-dependencies:
- soma
- anatomist
internal-dependencies:
- soma
- anatomist

type: interpreted
15 changes: 7 additions & 8 deletions recipes/soma-forge/src/recipes/cati-sacha.yaml
Original file line number Diff line number Diff line change
@@ -1,13 +1,12 @@
package:
name: cati-sacha

components:
- sacha-nonfree sacha-gpl
soma-forge:
components:
- sacha-nonfree sacha-gpl

internal-dependencies:
- soma
- anatomist
internal-dependencies:
- soma
- anatomist

requirements:
build:
- ${{ compiler('cxx') }}
type: compiled
17 changes: 8 additions & 9 deletions recipes/soma-forge/src/recipes/cati-whasa.yaml
Original file line number Diff line number Diff line change
@@ -1,14 +1,13 @@
package:
name: cati-whasa

components:
- whasa-nonfree
- whasa-gpl
soma-forge:
components:
- whasa-nonfree
- whasa-gpl

internal-dependencies:
- soma
- anatomist
internal-dependencies:
- soma
- anatomist

requirements:
build:
- ${{ compiler('cxx') }}
type: compiled
21 changes: 12 additions & 9 deletions recipes/soma-forge/src/recipes/cati.yaml
Original file line number Diff line number Diff line change
@@ -1,12 +1,15 @@
package:
name: cati

internal-dependencies:
- qualicati
- cati-longitudinal
- cati-rsfmri
- cati-sacha
- cati-whasa
- cati-deidentification
- catidb
- nuclear-imaging
soma-forge:
internal-dependencies:
- qualicati
- cati-longitudinal
- cati-rsfmri
- cati-sacha
- cati-whasa
- cati-deidentification
- catidb
- nuclear-imaging

type: virtual
11 changes: 7 additions & 4 deletions recipes/soma-forge/src/recipes/catidb.yaml
Original file line number Diff line number Diff line change
@@ -1,8 +1,11 @@
package:
name: catidb

components:
- catidb-client
soma-forge:
components:
- catidb-client

internal-dependencies:
- soma
internal-dependencies:
- soma

type: interpreted
15 changes: 7 additions & 8 deletions recipes/soma-forge/src/recipes/constellation.yaml
Original file line number Diff line number Diff line change
@@ -1,13 +1,12 @@
package:
name: constellation

components:
- constellation-gpl
- constellation-nonfree
soma-forge:
components:
- constellation-gpl
- constellation-nonfree

internal-dependencies:
- morphologist
internal-dependencies:
- morphologist

requirements:
build:
- ${{ compiler('cxx') }}
type: compiled
17 changes: 8 additions & 9 deletions recipes/soma-forge/src/recipes/cortical-surface.yaml
Original file line number Diff line number Diff line change
@@ -1,14 +1,13 @@
package:
name: cortical-surface

components:
- cortical_surface-gpl
- cortical_surface-nonfree
soma-forge:
components:
- cortical_surface-gpl
- cortical_surface-nonfree

internal-dependencies:
- morphologist
- soma-freesurfer
internal-dependencies:
- morphologist
- soma-freesurfer

requirements:
build:
- ${{ compiler('cxx') }}
type: compiled
17 changes: 8 additions & 9 deletions recipes/soma-forge/src/recipes/disco.yaml
Original file line number Diff line number Diff line change
@@ -1,14 +1,13 @@
package:
name: disco

components:
- disco
soma-forge:
components:
- disco

internal-dependencies:
- soma
- anatomist
- soma-spm
internal-dependencies:
- soma
- anatomist
- soma-spm

requirements:
build:
- ${{ compiler('cxx') }}
type: compiled
15 changes: 7 additions & 8 deletions recipes/soma-forge/src/recipes/highres-cortex.yaml
Original file line number Diff line number Diff line change
@@ -1,13 +1,12 @@
package:
name: highres-cortex

components:
- highres-cortex
soma-forge:
components:
- highres-cortex

internal-dependencies:
- soma
- anatomist
internal-dependencies:
- soma
- anatomist

requirements:
build:
- ${{ compiler('cxx') }}
type: compiled
13 changes: 6 additions & 7 deletions recipes/soma-forge/src/recipes/morphologist-baby.yaml
Original file line number Diff line number Diff line change
@@ -1,12 +1,11 @@
package:
name: morphologist-baby

components:
- morphologist-baby
soma-forge:
components:
- morphologist-baby

internal-dependencies:
- morphologist
internal-dependencies:
- morphologist

requirements:
build:
- ${{ compiler('cxx') }}
type: compiled
Loading

0 comments on commit 20fb987

Please sign in to comment.