Merge pull request #10 from duchesnay/gh-pages

New log + new people + signature page

README.md

@@ -49,18 +49,19 @@ Note: For the research collection, you will have to add a new `research_<CATEGOR
 
 Jekyll:
 
-- sudo apt install ruby-dev
-- echo '# Install Ruby Gems to ~/gems' >> ~/.bashrc
-- echo 'export GEM_HOME="$HOME/gems"' >> ~/.bashrc
-- echo 'export PATH="$HOME/gems/bin:$PATH"' >> ~/.bashrc
-- source ~/.bashrc
-- gem install jekyll bundler
-- cd $MYPROJECT
-- bundle init
-- bundle add jekyll webrick
-- bundle install
-- bundle exec jekyll serve --livereload --port 8080
-
+```
+sudo apt install ruby-dev
+echo '# Install Ruby Gems to ~/gems' >> ~/.bashrc
+echo 'export GEM_HOME="$HOME/gems"' >> ~/.bashrc
+echo 'export PATH="$HOME/gems/bin:$PATH"' >> ~/.bashrc
+source ~/.bashrc
+gem install jekyll bundler
+cd $MYPROJECT
+bundle init
+bundle add jekyll webrick
+bundle install
+bundle exec jekyll serve --livereload --port 8080
+```
 
 For Bibtex conversion:
 

_collections/_labs/gaia_signature.md

@@ -16,34 +16,38 @@ permalink: teams/gaia-signature.html
 <div class="content">
   <header><p>{{ page.title }} team</p></header>
   <p>
-​   The signature team focuses on the design of cutting-edge machine learning and statistical models to uncover neural signatures that can predict psychiatric disorders. Our goal is to harness the power of data by overseeing the effective management of multiple large-scale national and European initiatives. This will allow us to train and refine AI models to their fullest potential.
+​The signature team focuses on the design of cutting-edge machine learning and statistical models to uncover neural signatures that can predict psychiatric disorders. Our goal is to harness the power of data by overseeing the effective management of multiple large-scale national and European initiatives. This will allow us to train and refine AI models to their fullest potential.
   </p>
   <p>
     <b> Leader: </b>
     <script>mail2("{{page.leader | replace: " ", "." | downcase}}", "cea", 3, "", "{{page.leader}}")</script>
   </p>
+
 </div>
 <span class="image object">
   <img src="{{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}" alt="" />
 </span>
+
 </section>
 
+
+
 <!-- Content -->
 <br>
 Artificial Intelligence (AI) combined with neuroimaging opens up possibilities for personalized medicine. With this long-term objective, we developed four lines of research:
 
-<span style='font-size:30px;'>&#8594;</span> MODELS TO PRODUCE INT​​​ERPRETABLE BRAIN SIGNATURES OF DISORDERS
+**MODELS TO PRODUCE INT​​​ERPRETABLE BRAIN SIGNATURES OF DISORDERS**
 
 We investigated new predictive linear models that integrate prior biological knowledge to force the solution to adhere to biological priors, producing more plausible interpretable signatures. These models have been used to uncover an anatomical pattern of schizophrenia and a functional pattern for hallucinations. We embraced the applied mathematic challenge of creating scalable optimization solvers [for high-dimensional neuroimaging data while being flexible enough to integrate various priors.
 
-<span style='font-size:30px;'>&#8594;</span> MODELS TO ​​BRIDGE THE GAP BETWEEN BIG AND SMALL DATA
+**MODELS TO ​​BRIDGE THE GAP BETWEEN BIG AND SMALL DATA**
 
 Thanks to the award of a Chair in AI (2020-2025), we proposed new weakly-supervised deep neural networks that are pre-trained on large datasets of controls, using auxiliary information such as “age” to improve the embedded representation of the general variability. Models are then transferred to smaller samples of patients to reveal the specific signal associated with psychiatric disorders.
 
-<span style='font-size:30px;'>&#8594;</span> MODELS FOR PA​​​TIENTS’ STRATIFICATION ​​INTO HOMOGENEOUS SUBGROUPS
+**MODELS FOR PA​​​TIENTS’ STRATIFICATION ​​INTO HOMOGENEOUS SUBGROUPS**
 
 With shared etiologies for individualized therapeutic strategy.
 
-<span style='font-size:30px;'>&#8594;</span> UNLOCKING TH​​​E DATA ACCESS
+**UNLOCKING TH​​​E DATA ACCESS**
 
 Learning models require collecting more and better data (wide and deep phenotyping). First, we tackled the “big data challenge” by aggregating open datasets (UKB, ABCD, HBN) into an interoperable database. Second, we actively contributed and will continue to play a major role to the emergence of deeply phenotyped datasets by leading the data management and analysis of several large European and national projects (PEPR PROPSY, RHUs FAME and PsyCARE, European project R-LiNK). ​

_collections/_people/gaia_J-li.md

@@ -0,0 +1,11 @@
+---
+layout:
+name: Jinpeng Li
+desc: Research Engineer 2013-2014 (under superv. E Duchesnay)
+position: alumni
+cat: gaia
+subcat: signature
+avatar:
+joined: 2013
+---
+

_collections/_people/gaia_a-gaudin.md

@@ -1,7 +1,7 @@
 ---
 layout:
 name: Aymerci Gaudin
-desc:
+desc: Research Engineer
 position: engineer
 cat: gaia
 subcat: platform

_collections/_people/gaia_a-grigis.md

@@ -1,7 +1,7 @@
 ---
 layout:
 name: Antoine Grigis
-desc: HdR
+desc: Research Engineer, PhD, HdR
 position: engineer
 cat: gaia
 subcat: platform

_collections/_people/gaia_b-dolle.md

@@ -0,0 +1,11 @@
+---
+layout:
+name: Bérangère Dollé
+desc: Engineer 2022-2024 (under co-superv. E Duchesnay, A Grigis)
+position: alumni
+cat: gaia
+subcat: signature
+avatar:
+joined: 2022
+---
+

_collections/_people/gaia_c-fischer.md

@@ -1,7 +1,7 @@
 ---
 layout:
 name: Clara Fischer
-desc:
+desc: Research Engineer
 position: engineer
 cat: gaia
 subcat: cati

_collections/_people/gaia_c-philippe.md

@@ -1,7 +1,7 @@
 ---
 layout:
 name: Cathy Philippe
-desc: PhD
+desc: Research Scientist
 position: pi
 cat: gaia
 subcat: brainomics

_collections/_people/gaia_c-pinaud.md

@@ -0,0 +1,11 @@
+---
+layout:
+name: Clémence Pinaud
+desc: Engineer 2014 (under superv. E Duchesnay)
+position: alumni
+cat: gaia
+subcat: signature
+avatar:
+joined: 2014
+---
+

_collections/_people/gaia_d-papadopoulos.md

@@ -1,7 +1,7 @@
 ---
 layout:
 name: Dimitri Papadopoulos
-desc: PhD
+desc: Research Engineer, PhD
 position: engineer
 cat: gaia
 subcat: platform

_collections/_people/gaia_d-riviere.md

@@ -1,7 +1,7 @@
 ---
 layout:
 name: Denis Rivière
-desc: PhD
+desc: Research Scientist
 position: pi
 cat: gaia
 subcat: architecture

_collections/_people/gaia_e-duchesnay.md

@@ -1,7 +1,7 @@
 ---
 layout:
 name: Edouard Duchesnay
-desc: HdR
+desc: Head of Laboratory, Research Director
 position: pi
 cat: gaia
 subcat: signature

_collections/_people/gaia_f-hadj-selem.md

@@ -0,0 +1,11 @@
+---
+layout:
+name: Fouad Hadj Selem
+desc: PostDoc 2013-2015 (under superv. E Duchesnay)
+position: alumni
+cat: gaia
+subcat: signature
+avatar:
+joined: 2013
+---
+

_collections/_people/gaia_i-uszynski.md

@@ -1,7 +1,7 @@
 ---
 layout:
 name: Ivy Uszynski
-desc: PhD
+desc: Research Engineer, PhD
 position: engineer
 cat: gaia
 subcat: ginkgo

_collections/_people/gaia_j-victor.md

@@ -0,0 +1,11 @@
+---
+layout:
+name: Julie Victor
+desc: Engineer 2019-2022 (under co-superv. E Duchesnay, A Grigis)
+position: alumni
+cat: gaia
+subcat: signature
+avatar:
+joined: 2019
+---
+

_collections/_people/gaia_jf-mangin.md

@@ -1,10 +1,11 @@
 ---
 layout:
 name: Jean-François Mangin
-desc: HdR
+desc: Head of BAOBAB research unit, Research Director
 position: pi
 cat: gaia
 subcat: architecture
+site: https://sites.google.com/view/jfmangin/
 avatar:
 joined: 2006
 ---

_collections/_people/gaia_l-dorval.md

@@ -0,0 +1,11 @@
+---
+layout:
+name: Loic Dorval
+desc: Engineer 2021-2024 (under co-superv. E Duchesnay, A Grigis)
+position: alumni
+cat: gaia
+subcat: signature
+avatar:
+joined: 2021
+---
+

_collections/_people/gaia_m-dubois.md

@@ -0,0 +1,11 @@
+---
+layout:
+name: Mathieu Dubois
+desc: PostDoc 2013-2014 (under superv. E Duchesnay)
+position: alumni
+cat: gaia
+subcat: signature
+avatar:
+joined: 2013
+---
+

_collections/_people/gaia_p-auriau.md

@@ -1,6 +1,6 @@
 ---
 layout:
-name: Pierre Auriai
+name: Pierre Auriau
 desc: PhD 2025 (prepared under co-superv. E Duchesnay, JF Mangin, P Gorin, A Grigis)
 position: gradstudent
 cat: gaia

_collections/_people/gaia_p-favre.md

@@ -0,0 +1,12 @@
+---
+layout:
+name: Pauline Favre
+desc: PostDoc 2016 (under co-superv. E Duchesnay, J. Houenou, and JF Mangin)
+position: alumni
+cat: gaia
+subcat: signature
+site: http://pauline.favre-univ.fr/
+avatar:
+joined: 2013
+---
+

_collections/_people/gaia_p-gori.md

@@ -0,0 +1,11 @@
+---
+layout:
+name: Pietro Gori
+desc: PostDoc 2016 (under superv. E Duchesnay)
+position: alumni
+cat: gaia
+subcat: signature
+avatar:
+joined: 2013
+---
+

_collections/_people/gaia_r-vock.md

@@ -0,0 +1,11 @@
+---
+layout:
+name: Raphael Vock
+desc: PhD 2027 (prepared under co-superv. E Duchesnay, A Grigis)
+position: gradstudent
+cat: gaia
+subcat: signature
+avatar:
+joined: 2024
+---
+

_collections/_people/gaia_s-petiton.md

@@ -0,0 +1,11 @@
+---
+layout:
+name: Sara Petiton
+desc: PhD 2025 (prepared under co-superv. E Duchesnay, A Grigis)
+position: gradstudent
+cat: gaia
+subcat: signature
+avatar:
+joined: 2022
+---
+

_collections/_people/gaia_t-lofstedt.md

@@ -0,0 +1,12 @@
+---
+layout:
+name: Tommy Lofstedt
+desc: PostDoc 2013-2015 (under superv. E Duchesnay)
+position: alumni
+cat: gaia
+subcat: signature
+site: https://www.umu.se/en/staff/tommy-lofstedt/
+avatar:
+joined: 2013
+---
+

_collections/_people/gaia_v-frouin.md

@@ -1,7 +1,7 @@
 ---
 layout:
 name: Vincent Frouin
-desc: HdR
+desc: Research Director
 position: pi
 cat: gaia
 subcat: brainomics

_collections/_people/gaia_y-cointepas.md

@@ -1,7 +1,7 @@
 ---
 layout:
 name: Yann Cointepas
-desc: PhD
+desc: Research Engineer
 position: engineer
 cat: gaia
 subcat: cati