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neuroneural · Mar 25, 2024 · 1b2749b · 1b2749b
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diff --git a/docs/.buildinfo b/docs/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 83fa74df02d59a0197e7da21eff1a75a
+config: 40f7c48b625d3eea67cb262ff10407b6
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/_modules/gunfolds/conversions.html b/docs/_modules/gunfolds/conversions.html
diff --git a/docs/_modules/gunfolds/estimation/linear_model.html b/docs/_modules/gunfolds/estimation/linear_model.html
diff --git a/docs/_modules/index.html b/docs/_modules/index.html
@@ -256,7 +256,6 @@
           <h1>All modules for which code is available</h1>
 <ul><li><a href="gunfolds/conversions.html">gunfolds.conversions</a></li>
 <li><a href="gunfolds/estimation/grangercausality.html">gunfolds.estimation.grangercausality</a></li>
-<li><a href="gunfolds/estimation/linear_model.html">gunfolds.estimation.linear_model</a></li>
 <li><a href="gunfolds/estimation/pc.html">gunfolds.estimation.pc</a></li>
 <li><a href="gunfolds/solvers/clingo_msl.html">gunfolds.solvers.clingo_msl</a></li>
 <li><a href="gunfolds/solvers/clingo_rasl.html">gunfolds.solvers.clingo_rasl</a></li>

diff --git a/docs/_sources/conversions/internal.rst.txt b/docs/_sources/conversions/internal.rst.txt
@@ -38,6 +38,11 @@ g2vec
 .. autofunction:: gunfolds.conversions.g2vec
 
 
+Glag2CG
+-------
+.. autofunction:: gunfolds.conversions.Glag2CG
+
+
 graph2adj
 ---------
 .. autofunction:: gunfolds.conversions.graph2adj
@@ -63,6 +68,11 @@ num2CG
 .. autofunction:: gunfolds.conversions.num2CG
 
 
+nxbp2graph
+----------
+.. autofunction:: gunfolds.conversions.nxbp2graph
+
+
 ug2num
 ------
 .. autofunction:: gunfolds.conversions.ug2num

diff --git a/docs/_sources/estimation/linear_model.rst.txt b/docs/_sources/estimation/linear_model.rst.txt
@@ -8,21 +8,6 @@ AB2intAB
 .. autofunction:: gunfolds.estimation.linear_model.AB2intAB
 
 
-G2AH
-----
-.. autofunction:: gunfolds.estimation.linear_model.G2AH
-
-
-G2SVAR
-------
-.. autofunction:: gunfolds.estimation.linear_model.G2SVAR
-
-
-VARbic
-------
-.. autofunction:: gunfolds.estimation.linear_model.VARbic
-
-
 amap
 ----
 .. autofunction:: gunfolds.estimation.linear_model.amap
@@ -38,16 +23,16 @@ data2AB
 .. autofunction:: gunfolds.estimation.linear_model.data2AB
 
 
-data2VARgraph
--------------
-.. autofunction:: gunfolds.estimation.linear_model.data2VARgraph
-
-
 data2graph
 ----------
 .. autofunction:: gunfolds.estimation.linear_model.data2graph
 
 
+data2VARgraph
+-------------
+.. autofunction:: gunfolds.estimation.linear_model.data2VARgraph
+
+
 decide\_absences
 ----------------
 .. autofunction:: gunfolds.estimation.linear_model.decide_absences
@@ -73,6 +58,16 @@ estimateSVAR
 .. autofunction:: gunfolds.estimation.linear_model.estimateSVAR
 
 
+G2AH
+----
+.. autofunction:: gunfolds.estimation.linear_model.G2AH
+
+
+G2SVAR
+------
+.. autofunction:: gunfolds.estimation.linear_model.G2SVAR
+
+
 genData
 -------
 .. autofunction:: gunfolds.estimation.linear_model.genData
@@ -178,6 +173,11 @@ transitionMatrix4
 .. autofunction:: gunfolds.estimation.linear_model.transitionMatrix4
 
 
+VARbic
+------
+.. autofunction:: gunfolds.estimation.linear_model.VARbic
+
+
 weight\_and\_mask
 -----------------
 .. autofunction:: gunfolds.estimation.linear_model.weight_and_mask

diff --git a/docs/_sources/getting_started.rst.txt b/docs/_sources/getting_started.rst.txt
@@ -6,4 +6,4 @@ Getting Started
    getting_started/tutorials
    getting_started/contributors
    getting_started/publications
-
+ 
diff --git a/docs/_sources/solvers/imperative/traversal.rst.txt b/docs/_sources/solvers/imperative/traversal.rst.txt
@@ -13,11 +13,6 @@ addaAedge
 .. autofunction:: gunfolds.solvers.traversal.addaAedge
 
 
-addaVpath
----------
-.. autofunction:: gunfolds.solvers.traversal.addaVpath
-
-
 addacedge
 ---------
 .. autofunction:: gunfolds.solvers.traversal.addacedge
@@ -38,11 +33,21 @@ addavedge
 .. autofunction:: gunfolds.solvers.traversal.addavedge
 
 
+addaVpath
+---------
+.. autofunction:: gunfolds.solvers.traversal.addaVpath
+
+
 check3
 ------
 .. autofunction:: gunfolds.solvers.traversal.check3
 
 
+checkable
+---------
+.. autofunction:: gunfolds.solvers.traversal.checkable
+
+
 checkAedge
 ----------
 .. autofunction:: gunfolds.solvers.traversal.checkAedge
@@ -53,11 +58,6 @@ checkApath
 .. autofunction:: gunfolds.solvers.traversal.checkApath
 
 
-checkable
----------
-.. autofunction:: gunfolds.solvers.traversal.checkable
-
-
 checkbedges
 -----------
 .. autofunction:: gunfolds.solvers.traversal.checkbedges
@@ -98,16 +98,16 @@ chunks
 .. autofunction:: gunfolds.solvers.traversal.chunks
 
 
-cleanVedges
------------
-.. autofunction:: gunfolds.solvers.traversal.cleanVedges
-
-
 cleanedges
 ----------
 .. autofunction:: gunfolds.solvers.traversal.cleanedges
 
 
+cleanVedges
+-----------
+.. autofunction:: gunfolds.solvers.traversal.cleanVedges
+
+
 cloneempty
 ----------
 .. autofunction:: gunfolds.solvers.traversal.cloneempty
@@ -133,11 +133,6 @@ delaAedge
 .. autofunction:: gunfolds.solvers.traversal.delaAedge
 
 
-delaVpath
----------
-.. autofunction:: gunfolds.solvers.traversal.delaVpath
-
-
 delacedge
 ---------
 .. autofunction:: gunfolds.solvers.traversal.delacedge
@@ -158,6 +153,11 @@ delavedge
 .. autofunction:: gunfolds.solvers.traversal.delavedge
 
 
+delaVpath
+---------
+.. autofunction:: gunfolds.solvers.traversal.delaVpath
+
+
 edge\_function\_idx
 -------------------
 .. autofunction:: gunfolds.solvers.traversal.edge_function_idx
@@ -293,11 +293,6 @@ maskaCedge
 .. autofunction:: gunfolds.solvers.traversal.maskaCedge
 
 
-maskaVpath
-----------
-.. autofunction:: gunfolds.solvers.traversal.maskaVpath
-
-
 maskanedge
 ----------
 .. autofunction:: gunfolds.solvers.traversal.maskanedge
@@ -313,6 +308,11 @@ maskavedge
 .. autofunction:: gunfolds.solvers.traversal.maskavedge
 
 
+maskaVpath
+----------
+.. autofunction:: gunfolds.solvers.traversal.maskaVpath
+
+
 memo\_no\_return
 ----------------
 .. autofunction:: gunfolds.solvers.traversal.memo_no_return
@@ -328,11 +328,6 @@ ok2addaAedge
 .. autofunction:: gunfolds.solvers.traversal.ok2addaAedge
 
 
-ok2addaVpath
-------------
-.. autofunction:: gunfolds.solvers.traversal.ok2addaVpath
-
-
 ok2addacedge
 ------------
 .. autofunction:: gunfolds.solvers.traversal.ok2addacedge
@@ -363,6 +358,11 @@ ok2addavedge
 .. autofunction:: gunfolds.solvers.traversal.ok2addavedge
 
 
+ok2addaVpath
+------------
+.. autofunction:: gunfolds.solvers.traversal.ok2addaVpath
+
+
 prune\_sort\_CDS
 ----------------
 .. autofunction:: gunfolds.solvers.traversal.prune_sort_CDS

diff --git a/docs/_sources/solvers/imperative/unknownrate.rst.txt b/docs/_sources/solvers/imperative/unknownrate.rst.txt
@@ -53,16 +53,16 @@ confpairs
 .. autofunction:: gunfolds.solvers.unknownrate.confpairs
 
 
-delAloop
---------
-.. autofunction:: gunfolds.solvers.unknownrate.delAloop
-
-
 del\_loop
 ---------
 .. autofunction:: gunfolds.solvers.unknownrate.del_loop
 
 
+delAloop
+--------
+.. autofunction:: gunfolds.solvers.unknownrate.delAloop
+
+
 e2num
 -----
 .. autofunction:: gunfolds.solvers.unknownrate.e2num

diff --git a/docs/_sources/utils/comparison.rst.txt b/docs/_sources/utils/comparison.rst.txt
@@ -3,16 +3,6 @@ comparison
 .. currentmodule:: gunfolds.utils.comparison
 
 
-SM\_converging
---------------
-.. autofunction:: gunfolds.utils.comparison.SM_converging
-
-
-SM\_fixed
----------
-.. autofunction:: gunfolds.utils.comparison.SM_fixed
-
-
 compatible\_at\_u
 -----------------
 .. autofunction:: gunfolds.utils.comparison.compatible_at_u
@@ -48,3 +38,13 @@ search\_match
 .. autofunction:: gunfolds.utils.comparison.search_match
 
 
+SM\_converging
+--------------
+.. autofunction:: gunfolds.utils.comparison.SM_converging
+
+
+SM\_fixed
+---------
+.. autofunction:: gunfolds.utils.comparison.SM_fixed
+
+
diff --git a/docs/_sources/utils/graphkit.rst.txt b/docs/_sources/utils/graphkit.rst.txt
@@ -3,16 +3,6 @@ graphkit
 .. currentmodule:: gunfolds.utils.graphkit
 
 
-OCE
----
-.. autofunction:: gunfolds.utils.graphkit.OCE
-
-
-\_OCE
------
-.. autofunction:: gunfolds.utils.graphkit._OCE
-
-
 \_normed\_OCE
 -------------
 .. autofunction:: gunfolds.utils.graphkit._normed_OCE
@@ -23,21 +13,26 @@ OCE
 .. autofunction:: gunfolds.utils.graphkit._normed_undirected_OCE
 
 
+\_OCE
+-----
+.. autofunction:: gunfolds.utils.graphkit._OCE
+
+
 \_undirected\_OCE
 -----------------
 .. autofunction:: gunfolds.utils.graphkit._undirected_OCE
 
 
-addAring
---------
-.. autofunction:: gunfolds.utils.graphkit.addAring
-
-
 addanedge
 ---------
 .. autofunction:: gunfolds.utils.graphkit.addanedge
 
 
+addAring
+--------
+.. autofunction:: gunfolds.utils.graphkit.addAring
+
+
 addedges
 --------
 .. autofunction:: gunfolds.utils.graphkit.addedges
@@ -183,6 +178,11 @@ no\_parents
 .. autofunction:: gunfolds.utils.graphkit.no_parents
 
 
+OCE
+---
+.. autofunction:: gunfolds.utils.graphkit.OCE
+
+
 oerror
 ------
 .. autofunction:: gunfolds.utils.graphkit.oerror

diff --git a/docs/conversions.html b/docs/conversions.html
@@ -390,6 +390,10 @@ <h1>conversions<a class="headerlink" href="#conversions" title="Link to this hea
 <li class="toctree-l3"><a class="reference internal" href="conversions/internal.html#gunfolds.conversions.g2vec"><code class="docutils literal notranslate"><span class="pre">g2vec()</span></code></a></li>
 </ul>
 </li>
+<li class="toctree-l2"><a class="reference internal" href="conversions/internal.html#glag2cg">Glag2CG</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="conversions/internal.html#gunfolds.conversions.Glag2CG"><code class="docutils literal notranslate"><span class="pre">Glag2CG()</span></code></a></li>
+</ul>
+</li>
 <li class="toctree-l2"><a class="reference internal" href="conversions/internal.html#graph2adj">graph2adj</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="conversions/internal.html#gunfolds.conversions.graph2adj"><code class="docutils literal notranslate"><span class="pre">graph2adj()</span></code></a></li>
 </ul>
@@ -410,6 +414,10 @@ <h1>conversions<a class="headerlink" href="#conversions" title="Link to this hea
 <li class="toctree-l3"><a class="reference internal" href="conversions/internal.html#gunfolds.conversions.num2CG"><code class="docutils literal notranslate"><span class="pre">num2CG()</span></code></a></li>
 </ul>
 </li>
+<li class="toctree-l2"><a class="reference internal" href="conversions/internal.html#nxbp2graph">nxbp2graph</a><ul>
+<li class="toctree-l3"><a class="reference internal" href="conversions/internal.html#gunfolds.conversions.nxbp2graph"><code class="docutils literal notranslate"><span class="pre">nxbp2graph()</span></code></a></li>
+</ul>
+</li>
 <li class="toctree-l2"><a class="reference internal" href="conversions/internal.html#ug2num">ug2num</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="conversions/internal.html#gunfolds.conversions.ug2num"><code class="docutils literal notranslate"><span class="pre">ug2num()</span></code></a></li>
 </ul>
Original file line number	Diff line number	Diff line change
Expand Up		@@ -6,4 +6,4 @@ Getting Started
		getting_started/tutorials
		getting_started/contributors
		getting_started/publications