##Scripts for running GATK Mutect2 on Phoenix, using PONs and gnomAD AFs https://software.broadinstitute.org/gatk/documentation/tooldocs/current/org_broadinstitute_hellbender_tools_walkers_mutect_Mutect2.php
###Script in development for analysis of genomes and WES data for somatic mosaicism https://github.com/zzhang526/MosaicHunter/tree/master/docs