Add profiles

- "dev" replaces the old behaviour
- other profile names replace the files in the other subdirectories
- start with `docker compose --profile <NAME> up`

dev/docker-compose.yml

@@ -4,6 +4,10 @@ services:
 
   api:
     image: "neurobagel/api:${NB_NAPI_TAG:-latest}"
+    profiles:
+      - "local_node"
+      - "local_node_query"
+      - "dev"
     ports:
       - "${NB_NAPI_PORT_HOST:-8000}:${NB_NAPI_PORT:-8000}"
     environment:
@@ -18,6 +22,10 @@ services:
 
   graph:
     image: "${NB_GRAPH_IMG:-ontotext/graphdb:10.3.1}"
+    profiles:
+      - "local_node"
+      - "local_node_query"
+      - "dev"
     volumes:
       - "${NB_GRAPH_ROOT_HOST:-~/graphdb-home}:${NB_GRAPH_ROOT_CONT:-/opt/graphdb/home}"
       - "${PWD}:/usr/src"
@@ -29,17 +37,22 @@ services:
 
   federation:
     image: "neurobagel/federation_api:${NB_FAPI_TAG:-latest}"
+    profiles:
+      - "local_federation"
+      - "dev"
     ports:
       - "${NB_FAPI_PORT_HOST:-8080}:${NB_FAPI_PORT:-8000}"
     volumes:
       - "${PWD}/local_nb_nodes.json:/usr/src/local_nb_nodes.json:ro"
     environment:
       NB_API_PORT: ${NB_FAPI_PORT:-8000}
-    extra_hosts:
-      - "host.docker.internal:host-gateway"
 
   query:
     image: "neurobagel/query_tool:${NB_QUERY_TAG:-latest}"
+    profiles:
+      - "local_federation"
+      - "local_node_query"
+      - "dev"
     ports:
       - "${NB_QUERY_PORT_HOST:-3000}:5173"
     environment: