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Update docs/infrastructure.md
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Co-authored-by: Sebastian Urchs <[email protected]>
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alyssadai and surchs authored Nov 2, 2023
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Including these relationships in a graph is important to be able to answer questions such as how many different diagnoses are represented in a graph database, to query for higher-order concepts for a given variable, and more.

The participant variables modeled by Neurobagel are named using Neurobagel's own vocabulary (for more information, see this page on [controlled terms](./term_naming_standards.md)).
This vocabulary, which defines internal relationships between vocabulary terms, is serialized in the file [`nb_vocab.ttl`](https://github.com/neurobagel/api/blob/main/vocab/nb_vocab.ttl) available from the `neurobagel/api` repository.
This vocabulary, which defines internal relationships between vocabulary terms,
is serialized in the file [`nb_vocab.ttl`](https://github.com/neurobagel/api/blob/main/vocab/nb_vocab.ttl) available from the `neurobagel/api` repository.
If you have cloned the api repository, you will already have downloaded the vocabulary file.

**The `nb_vocab.ttl` file should be added to every created Neurobagel graph database.**
This can be done using the same script we used to upload the dataset JSONLD files, [`add_data_to_graph.sh`](https://github.com/neurobagel/api/blob/main/add_data_to_graph.sh), which adds all `.ttl` and/or `.jsonld` files in a given directory to the specified graph.
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