[REF] Provide context on uploading data

docs/config.md

@@ -284,14 +284,14 @@ These are manual steps for configuring the GraphDB backend after launching the N
     you can connect to the Workbench at [http://localhost:7200](http://localhost:7200).
     The Workbench is well documented on the [GraphDB website](https://graphdb.ontotext.com/documentation/10.0/workbench-user-interface.html).
 
-
-
 ### Uploading data to the graph store
 
-Data are automatically uploaded to the graph from the path specified with 
-the `LOCAL_GRAPH_DATA` in the `.env` configuration file. when the Neurobagel stack is launched.
-Below is an example of how you would upload data manually using the script 
-[`add_data_to_graph.sh`](https://github.com/neurobagel/recipes/blob/main/scripts/add_data_to_graph.sh):
+Data are automatically uploaded to the graph from the path specified with
+the `LOCAL_GRAPH_DATA` in the `.env` configuration file when the Neurobagel stack is (re-)started.
+
+If you instead prefer to upload data manually,
+you can use the
+[`add_data_to_graph.sh`](https://github.com/neurobagel/recipes/blob/main/scripts/add_data_to_graph.sh) script:
 
 ``` bash
 ./add_data_to_graph.sh PATH/TO/YOUR/GRAPH-DATA \

docs/maintaining.md

@@ -71,9 +71,35 @@ docker compose --profile full_stack up -d
 
 ## Updating the data in your graph
 
+If you have followed the [initial setup](getting_started.md)
+and have deployed your Neurobagel node from our Docker Compose recipe,
+your node will have a dedicated graph database that only contains 
+the data for your node.
+
+This makes updating the data in your graph a straightforward process.
+Once you have generated the updated files you want to upload,
+the process to update the data in your graph is:
+
+1. Shut down the Neurobagel node
+
+    ```bash
+    docker compose --profile full_stack down
+    ```
+
+2. Update the data files in [your `LOCAL_GRAPH_DATA` directory](config.md#uploading-data-to-the-graph-store)
+3. Restart the Neurobagel node
+
+    ```bash
+    docker compose --profile full_stack up -d
+    ```
+
+Here are some common scenarios where you might need to update the data in your graph:
+
 ### Following a change in my _dataset_
 
-When using Neurobagel tools on a dataset that is still undergoing data collection, you may need to update the Neurobagel annotations and/or graph-ready data for the dataset when you want to add new subjects or measurements or to correct mistakes in prior data versions.
+When using Neurobagel tools on a dataset that is still undergoing data collection,
+you may need to update the Neurobagel annotations and/or graph-ready data for the dataset
+when you want to add new subjects or measurements or to correct mistakes in prior data versions.
 
 For any of the below types of changes, you will need to regenerate a graph-ready `.jsonld` file for the dataset which reflects the change.