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Fixed validation error on empty form
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tanja-de-jong committed Sep 12, 2017
1 parent 55da03c commit 35da51b
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Showing 6 changed files with 141 additions and 36 deletions.
Original file line number Diff line number Diff line change
Expand Up @@ -31,9 +31,11 @@ public class APathToXPathConverter {

public static String convertQueryToXPath(String query, String firstNodeName) {
String convertedQuery = convertWithAntlr(query);
if(query.startsWith("//")) {
if(convertedQuery.equals("/")) {
return "/" + firstNodeName;
} else if(query.startsWith("//")) {
return convertedQuery;
} if(query.startsWith("/")) {
} else if(query.startsWith("/")) {
return "/" + firstNodeName + convertedQuery;
} else {
return convertedQuery;
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27 changes: 18 additions & 9 deletions src/main/java/com/nedap/archie/query/RMQueryContext.java
Original file line number Diff line number Diff line change
Expand Up @@ -37,6 +37,7 @@ public class RMQueryContext {
private final XPathFactory xPathFactory;
private Binder<Node> binder;
private Document domForQueries;
private Object rootNode;

/**
* TODO: for now we will add /firstXPathNode, because otherwise there will be something like '/composition' missing
Expand All @@ -60,6 +61,7 @@ public RMQueryContext(Object rootNode) {
*/
public RMQueryContext(Object rootNode, JAXBContext jaxbContext) {
try {
this.rootNode = rootNode;
this.binder = jaxbContext.createBinder();
domForQueries = createBlankDOMDocument(true);

Expand Down Expand Up @@ -96,17 +98,24 @@ public Document createBlankDOMDocument(boolean namespaceAware) {
}

public <T> List<T> findList(String query) throws XPathExpressionException {
String convertedQuery = APathToXPathConverter.convertQueryToXPath(query, firstXPathNode);
XPath xpath = xPathFactory.newXPath();
List<T> result = new ArrayList<T>();

if (query.equals("/")) {
result.add((T) rootNode);
} else {

xpath.setNamespaceContext( new ArchieNamespaceResolver(domForQueries));
NodeList foundNodes = (NodeList)xpath.evaluate(convertedQuery, domForQueries, XPathConstants.NODESET);
List<T> result = new ArrayList<T>();
//Perform decoration
for(int i=0; i<foundNodes.getLength(); i++){
Node node = foundNodes.item(i);
result.add(getJAXBNode(node));
String convertedQuery = APathToXPathConverter.convertQueryToXPath(query, firstXPathNode);
XPath xpath = xPathFactory.newXPath();


xpath.setNamespaceContext(new ArchieNamespaceResolver(domForQueries));
NodeList foundNodes = (NodeList) xpath.evaluate(convertedQuery, domForQueries, XPathConstants.NODESET);

//Perform decoration
for (int i = 0; i < foundNodes.getLength(); i++) {
Node node = foundNodes.item(i);
result.add(getJAXBNode(node));
}
}

return result;
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Original file line number Diff line number Diff line change
Expand Up @@ -60,7 +60,8 @@ public void fixAssertions(Archetype archetype, AssertionResult assertionResult)

while(parents.isEmpty()) {
//there's object missing in the RMObject. Construct it here.
parents = constructMissingStructure(archetype, pathOfParent, lastPathSegment, parents);
constructMissingStructure(archetype, pathOfParent, lastPathSegment, parents);
parents = ruleEvaluation.getQueryContext().findList(pathOfParent);
}

for(Object parent:parents) {
Expand Down Expand Up @@ -188,7 +189,7 @@ private void setTerminologyFromArchetype(Archetype archetype, DvCodedText codedT
}
}

private List<Object> constructMissingStructure(Archetype archetype, String pathOfParent, String lastPathSegment, List<Object> parents) throws XPathExpressionException {
private void constructMissingStructure(Archetype archetype, String pathOfParent, String lastPathSegment, List<Object> parents) throws XPathExpressionException {
//TODO: this is great but not enough. Fix it by hardcoding support for DV_CODED_TEXT and DV_ORDINAL, here or in the FixableAssertionsChecker.
String newPathOfParent = pathOfParent;
String newLastPathSegment = lastPathSegment;
Expand All @@ -198,7 +199,13 @@ private List<Object> constructMissingStructure(Archetype archetype, String pathO
newPathOfParent = stripLastPathSegment(newPathOfParent);
parents = ruleEvaluation.getQueryContext().findList(newPathOfParent);
}
List<ArchetypeModelObject> constraints = archetype.itemsAtPath(newPathOfParent + "/" + newLastPathSegment);
List<ArchetypeModelObject> constraints;
if (newPathOfParent.equals("/")) {
constraints = archetype.itemsAtPath("/" + newLastPathSegment);
} else {
constraints = archetype.itemsAtPath(newPathOfParent + "/" + newLastPathSegment);
}

if (constraintsHasNoComplexObjects(constraints)) {
Object object = parents.get(0);

Expand All @@ -207,7 +214,6 @@ private List<Object> constructMissingStructure(Archetype archetype, String pathO

creator.addElementToListOrSetSingleValues(object, newLastPathSegment, Lists.newArrayList(newEmptyObject));
ruleEvaluation.refreshQueryContext();
parents = ruleEvaluation.getQueryContext().findList(pathOfParent);
} else {
CObject constraint = getCObjectFromResult(constraints);
if (constraint != null) {
Expand All @@ -229,10 +235,8 @@ private List<Object> constructMissingStructure(Archetype archetype, String pathO
creator.addElementToListOrSetSingleValues(object, attributeName, Lists.newArrayList(newEmptyObject));

ruleEvaluation.refreshQueryContext();
parents = ruleEvaluation.getQueryContext().findList(pathOfParent);
}
}
return parents;
}

private CObject getCObjectFromResult(List<? extends ArchetypeModelObject> objects) {
Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -28,24 +28,6 @@ class EmptyRMObjectConstructor {
* @return
*/
RMObject constructEmptyRMObject(CObject object) {
RMObject result = creator.create(object);
for(CAttribute attribute: object.getAttributes()) {
List<Object> children = new ArrayList<>();
for(CObject childConstraint:attribute.getChildren()) {
if(childConstraint instanceof CComplexObject) {
RMObject childObject = constructEmptyRMObject(childConstraint);
children.add(childObject);
}
}
if(!children.isEmpty()) {
if(attribute.isMultiple()) {
creator.set(result, attribute.getRmAttributeName(), children);
} else if(!children.isEmpty()){
//set the first possible result in case of multiple children for a single valued value
creator.set(result, attribute.getRmAttributeName(), Lists.newArrayList(children.get(0)));
}
}
}
return result;
return creator.create(object);
}
}
Original file line number Diff line number Diff line change
Expand Up @@ -19,10 +19,12 @@ public class FixableAssertionsCheckerTest {
private Archetype archetype;

private TestUtil testUtil;
private EmptyRMObjectConstructor emptyRMObjectConstructor;

@Before
public void setup() {
testUtil = new TestUtil();
emptyRMObjectConstructor = new EmptyRMObjectConstructor();
parser = ADLParser.withRMConstraintsImposer();
}

Expand Down Expand Up @@ -88,4 +90,28 @@ public void andExpression() throws Exception {

}

@Test
public void constructOnlyNecessaryStructure() throws Exception {
archetype = parser.parse(ParsedRulesEvaluationTest.class.getResourceAsStream("construct_only_necessary_structure.adls"));
RuleEvaluation ruleEvaluation = new RuleEvaluation(archetype);

Pathable root = (Pathable) emptyRMObjectConstructor.constructEmptyRMObject(archetype.getDefinition());
EvaluationResult evaluate = ruleEvaluation.evaluate(root, archetype.getRules().getRules());
assertEquals("there must be three values that must be set", 1, evaluate.getSetPathValues().size());

//assert that paths must be set to specific values
assertEquals("test string", evaluate.getSetPathValues().get("/data[id2]/events[id3]/data[id4]/items[id5]/value/value").getValue());
assertEquals(null, evaluate.getSetPathValues().get("d/ata[id2]/events[id3]/data[id4]/items[id6]/value"));

//now assert that the RM Object cloned by rule evaluation has been modified with the new values for further evaluation
assertEquals("test string", ruleEvaluation.getRMRoot().itemAtPath("/data[id2]/events[id3]/data[id4]/items[id5]/value/value"));
assertEquals(null, ruleEvaluation.getRMRoot().itemAtPath("/data[id2]/events[id3]/data[id4]/items[id6]/value"));

evaluate = ruleEvaluation.evaluate(ruleEvaluation.getRMRoot(), archetype.getRules().getRules());
for(AssertionResult result:evaluate.getAssertionResults()) {
assertTrue(result.getResult());
}

}

}
Original file line number Diff line number Diff line change
@@ -0,0 +1,82 @@
archetype (adl_version=2.0.5; rm_release=1.0.2; generated)
openEHR-EHR-OBSERVATION.matches.v1.0.0

language
original_language = <[ISO_639-1::en]>

description
original_author = <
["name"] = <"Pieter Bos">
>
details = <
["en"] = <
language = <[ISO_639-1::en]>
purpose = <"Test for rules, simple constant arithmetics">
keywords = <"ADL", "test">
>
>
lifecycle_state = <"published">
other_details = <
["regression"] = <"PASS">
>
copyright = <"copyright © 2004 openEHR Foundation <http://www.openEHR.org>">

definition
OBSERVATION[id1] matches { -- Body mass index
data matches {
HISTORY[id2] matches {
events cardinality matches {1..*; unordered} matches {
EVENT[id3] occurrences matches {1..*} matches { -- Any event
data matches {
ITEM_TREE[id4] matches {
items cardinality matches {1..*; unordered} matches {
ELEMENT[id5] matches {
value matches {
DV_TEXT[id64]
}
}
ELEMENT[id6] matches {
value matches {
DV_ORDINAL[id7] matches {
[value, symbol] matches {
[{2}, {[at1]}],
[{1}, {[at2]}],
[{0}, {[at3]}]
}
}
}
}
}
}
}
}
}
}
}
}

rules
/data[id2]/events[id3]/data[id4]/items[id5]/value/value matches {"test string"}

terminology
term_definitions = <
["en"] = <
["id1"] = <
text = <"Blood Pressure">
description = <"The local measurement of arterial blood pressure which is a surrogate for arterial. pressure in the systemic circulation. Most commonly, use of the term 'blood pressure' refers to measurement of brachial artery pressure in the upper arm.">
>
["at1"] = <
text = <"De patiënt kan dit zelf">
description = <"De patiënt kan dit zelf">
>
["at2"] = <
text = <"De patiënt heeft hulp van 1 persoon nodig">
description = <"De patiënt heeft hulp van 1 persoon nodig">
>
["at3"] = <
text = <"De patiënt heeft hulp van 2 of meer personen nodig">
description = <"De patiënt heeft hulp van 2 of meer personen nodig">
>
>
>

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