GitHub - ndfriedman/hypermutationAnalysisProject: scripts/analyses for understanding evolution in hypermutated cancers

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scripts/analyses for understanding evolution in hypermutated cancers

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Name		Name	Last commit message	Last commit date
Latest commit History 151 Commits
mutSimulation		mutSimulation
plottingScripts		plottingScripts
TMZ_pre_post_analyis.py		TMZ_pre_post_analyis.py
analyze_hypermutator_hotspot_burden.py		analyze_hypermutator_hotspot_burden.py
analyze_rna_data.py		analyze_rna_data.py
apobec_hypermutation_analysis.py		apobec_hypermutation_analysis.py
cancer_type_mut_features_analysis.py		cancer_type_mut_features_analysis.py
cancer_type_specific_mut_features_PLOTTING.R		cancer_type_specific_mut_features_PLOTTING.R
clonal_fraction_analysis.py		clonal_fraction_analysis.py
compare_double_mutation_incidence.py		compare_double_mutation_incidence.py
compare_hypermutator_vs_normal_gene_mut_characteristics.py		compare_hypermutator_vs_normal_gene_mut_characteristics.py
compare_mutations_by_hypermutator_motif.py		compare_mutations_by_hypermutator_motif.py
create_project_config_files.py		create_project_config_files.py
define_and_classify_hypermutators.py		define_and_classify_hypermutators.py
double_mut_oncoprint.py		double_mut_oncoprint.py
double_mutation_vaf_analysis.py		double_mutation_vaf_analysis.py
essentialFilesInfo.txt		essentialFilesInfo.txt
filesAndSourcesGuide.md		filesAndSourcesGuide.md
gene_enrichment_analyses.py		gene_enrichment_analyses.py
hypermutationTwoSampleAnalysis.py		hypermutationTwoSampleAnalysis.py
hypermutator_copy_number_analyses.py		hypermutator_copy_number_analyses.py
hypermutator_doublet_analysis.py		hypermutator_doublet_analysis.py
hypermutator_mutation_consequence_analysis.py		hypermutator_mutation_consequence_analysis.py
hypermutator_phasing_analysis.py		hypermutator_phasing_analysis.py
investigate_hypermutator_clonality.py		investigate_hypermutator_clonality.py
lung_cancer_smoking_mutation_analysis.py		lung_cancer_smoking_mutation_analysis.py
make_pentanucleotide_mafs.py		make_pentanucleotide_mafs.py
mutation_location_analysis.py		mutation_location_analysis.py
pathway_comutation_analysis.py		pathway_comutation_analysis.py
poleDoubleHitMutationUtil.py		poleDoubleHitMutationUtil.py
pole_mmr_endometrial_hypermuation_analysis.py		pole_mmr_endometrial_hypermuation_analysis.py
prepare_pan_impact_hotspot_oncogenic_summary_info.py		prepare_pan_impact_hotspot_oncogenic_summary_info.py
runDnDsCv.R		runDnDsCv.R
summarize_maf_for_hypermuation_analysis.py		summarize_maf_for_hypermuation_analysis.py
tmz_hypermuation_vs_normal_analysis.py		tmz_hypermuation_vs_normal_analysis.py
uv_hypermuation_analysis.py		uv_hypermuation_analysis.py