Test against python 3.12

.github/workflows/test-install.yml

@@ -19,7 +19,7 @@ jobs:
  - "3.9"
  - "3.10"
  - "3.11"
- # - "3.12"
+ - "3.12"
  runs-on: ${{ matrix.os }}
  steps:
  # This cancels any such job that is still runnning

.github/workflows/test-package.yml

@@ -11,42 +11,42 @@ jobs:
  - "3.9"
  - "3.10"
  - "3.11"
- # - "3.12"
+ - "3.12"
  igraph: ["igraph", "no-igraph"]
  steps:
  # This cancels any such job that is still runnning
- - name: Cancel Previous Runs
- uses: styfle/[email protected]
- with:
- access_token: ${{ github.token }}
- - uses: actions/checkout@v2
- - name: Set up Python ${{ matrix.python-version }}
- uses: actions/setup-python@v2
- with:
- python-version: ${{ matrix.python-version }}
- - name: Install Linux libraries
- run: |
- sudo apt-get install -y libdbus-1-3 libxkbcommon-x11-0 libxcb-icccm4 \
- libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 \
- libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0 graphviz graphviz-dev
- - name: Install dependencies
- run: |
- pip install --upgrade pip
- pip install zstandard==0.16.0
- pip install numpy
- pip install flybrains --no-deps
- pip install git+https://github.com/siavashk/pycpd@master
- pip install k3d
- pip install pyarrow
- - name: Install navis
- run: pip install -e .[dev,vispy-pyqt5,pathos,cloudvolume]
- - run: pip install python-igraph
- if: ${{ matrix.igraph == 'igraph' }}
- - name: Report dependency versions
- run: pip freeze -r requirements.txt
- - name: Test
- uses: GabrielBB/xvfb-action@v1
- with:
+ - name: Cancel Previous Runs
+ uses: styfle/[email protected]
+ with:
+ access_token: ${{ github.token }}
+ - uses: actions/checkout@v2
+ - name: Set up Python ${{ matrix.python-version }}
+ uses: actions/setup-python@v2
+ with:
+ python-version: ${{ matrix.python-version }}
+ - name: Install Linux libraries
  run: |
- export NAVIS_HEADLESS=TRUE
- pytest --verbose
+ sudo apt-get install -y libdbus-1-3 libxkbcommon-x11-0 libxcb-icccm4 \
+ libxcb-image0 libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 \
+ libxcb-xinerama0 libxcb-xinput0 libxcb-xfixes0 graphviz graphviz-dev
+ - name: Install dependencies
+ run: |
+ pip install --upgrade pip
+ pip install zstandard==0.16.0
+ pip install numpy
+ pip install flybrains --no-deps
+ pip install git+https://github.com/siavashk/pycpd@master
+ pip install k3d
+ pip install pyarrow
+ - name: Install navis
+ run: pip install -e .[dev,vispy-pyqt5,pathos,cloudvolume]
+ - run: pip install python-igraph
+ if: ${{ matrix.igraph == 'igraph' }}
+ - name: Report dependency versions
+ run: pip freeze -r requirements.txt
+ - name: Test
+ uses: GabrielBB/xvfb-action@v1
+ with:
+ run: |
+ export NAVIS_HEADLESS=TRUE
+ pytest --verbose

requirements.txt

@@ -1,7 +1,7 @@
 h5py>=3.1
 matplotlib>=3.6
 morphops>=0.1.11
-ncollpyde>=0.18
+ncollpyde>=0.18,<0.20
 networkx>=2.4
 numpy>=1.16
 pandas>=1.0

setup.py

@@ -69,7 +69,7 @@
  'Programming Language :: Python :: 3.9',
  'Programming Language :: Python :: 3.10',
  'Programming Language :: Python :: 3.11',
- # 'Programming Language :: Python :: 3.12',
+ 'Programming Language :: Python :: 3.12',
  ],
  install_requires=install_requires,
  extras_require=dict(extras_require),