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tau memory_instrumentation (v4.0.x)#7

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Commits on Mar 19, 2019

• btl/openib: delay UCX warning to add_procs()

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• btl/openib: have add_proc() return immediately when the port is disabled.

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• btl/openib: immediately release the device when no port is allowed

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Commits on May 3, 2019

• pml/ob1: fixed local handle sent during PUT control message

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• Fix the leak of fragments for persistent sends.

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Commits on May 20, 2019

• Coll/hcoll: don't init opal memhooks unless explicitely requested by user

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• btl/uct: check for support before disabling UCX memory hooks

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Commits on May 23, 2019

• SSHMEM/COLL: added sshmem/mpi implementation for shmem_collect call

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Commits on May 27, 2019

• ALLOC_WITH_HINT: added implace realloc

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• SHADOW ALLOCATOR: minor code optimization

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• OSHMEM: minor optimization of realloc in shadow allocator

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Commits on May 30, 2019

• SPML/UCX: added synchronized flush on quiet

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• shmat/shmdt additions for patcher

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• Fixed SPC/MPI_T initialization error.

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Commits on May 31, 2019

• Merge pull request open-mpi#6718 from hoopoepg/topic/pci-flush-on-quiet-v4.0

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• Fix the SPC initialization.

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• Fix the man pages for some of the MPI_T_* functions.

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• Use the correct counter name in the example.

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Commits on Jun 3, 2019

• Merge pull request open-mpi#6696 from gpaulsen/topic/v4.0.x/btl_uct_from_6668

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• Merge pull request open-mpi#6720 from markalle/patcher_additions_v40x

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• Merge pull request open-mpi#6692 from vspetrov/v4.0.x

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• Merge pull request open-mpi#6152 from ggouaillardet/topic/v4.0.x/ucx_warning

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Commits on Jun 4, 2019

• Fix tree spawn at scale

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• Ignore generated file

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Commits on Jun 5, 2019

• shmem/c: Fix shmem type for calls to shmem_test and shmem_wait_until with [u]int32_t and [u]int64_t

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• Merge pull request open-mpi#6701 from hoopoepg/topic/sshmem-mpi-coll-collect-v4.0

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Commits on Jun 6, 2019

• regx/base: fix an integer overflow

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• Merge pull request open-mpi#6707 from hoopoepg/topic/alloc-with-hint-realloc-inplace-v4.0

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Commits on Jun 7, 2019

• mpiext/pcollreq: Add _f08 to procedure names

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• OSC rdma: make sure accumulating in shared memory is safe

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• Merge pull request open-mpi#6745 from yanagibashi/pr/v4.0.x/add-f08-procedure-names

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• Merge pull request open-mpi#6741 from open-mpi/smiller_shmem_wait_types_v4.0.x

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• Merge pull request open-mpi#6739 from ggouaillardet/topic/regx_atoi

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• Merge pull request open-mpi#6714 from rhc54/cmr40/routed

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• btl/uct: add support for UCX 1.6.x

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Commits on Jun 9, 2019

• COLL/BASE: Fix linear sync all2all

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Commits on Jun 14, 2019

• Merge pull request open-mpi#6747 from devreal/rdma-fetchop-local-v4.0.x

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Commits on Jun 17, 2019

• Merge pull request open-mpi#6748 from gpaulsen/topic/v4.0.x/fix_ucx_1.6_issue6640

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• Merge pull request open-mpi#6750 from brminich/topic/all2all_linear_sync_fix_v4.0

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Commits on Jun 19, 2019

• Fix finalize of flux component

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Commits on Jun 24, 2019

• OSC rdma win allocate: synchronize error codes across shared memory group

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• Merge pull request open-mpi#6725 from bosilca/cherrypick/6683

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• Merge pull request open-mpi#6765 from rhc54/cmr4/flux

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Commits on Jun 25, 2019

• Suggestion to fix division by zero in file view.

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• Update to PMIx v3.1.3rc4

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Commits on Jun 26, 2019

• Update to track 32-bit support commit

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• Merge pull request open-mpi#6774 from hppritcha/topic/pr_6759_for_v4.0.x

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• Merge pull request open-mpi#6634 from jsquyres/pr/v4.0.x/ob1-fixes

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• Merge pull request open-mpi#6776 from rhc54/cmr40/pmix

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Commits on Jun 28, 2019

• Merge pull request open-mpi#6770 from devreal/osc_winalloc_err_v4.0.x

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Commits on Jul 2, 2019

• v4.0.x: Update PMIx to official v3.1.3 release

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Commits on Jul 3, 2019

• pml/ucx: Fix the max tag and context id values

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Commits on Jul 8, 2019

• Merge pull request open-mpi#6787 from rhc54/cmr40/pmix

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• Merge pull request open-mpi#6792 from hoopoepg/topic/ucx_maxtag_fix-v4.0

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• Fix oob_tcp tcp_component_close segfault with active listeners

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Commits on Jul 9, 2019

• Merge pull request open-mpi#6800 from jsquyres/pr/v4.0.x/tcp-oob-active-listeners-fix

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Commits on Jul 12, 2019

• Manage errors in NBC collective ops

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• mpi: retain operation and datatype in non blocking collectives

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• btl/openib: fix issue 6785

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• v4.0.x OSC: Reset external request to NULL to avoid double request

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Commits on Jul 16, 2019

• Merge pull request open-mpi#6806 from ggouaillardet/topic/v4.0.x/nbc_retain

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• Merge pull request open-mpi#6804 from hppritcha/topic/swat_issue_6785

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Commits on Jul 23, 2019

• Merge pull request open-mpi#6810 from janjust/v4.0.x

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Commits on Jul 24, 2019

• fortran/mpif-h: fix C to Fortran error code conversion

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• fortran/mpif-h: fix MPI_[I]Alltoallw() binding

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• fortran/mpif-h: fix [i]alltoallw bindings

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• pcollreq/mpif-h: fix MPIX_Alltoallw_init() binding

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• pcollreq/mpif-h: fix MPIX_Alltoallw_init() binding

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• Try to prevent the compiler from optimizing out MPIR_Breakpoint().

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Commits on Jul 26, 2019

• Merge pull request open-mpi#6843 from awlauria/mpir_opt_v4.0.x

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• COLL/TUNED: Update alltoall selection rule for mlx

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• COLL/TUNED: Minor var names/comments fixes

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• osc/ucx: Fix data corruption with non-contiguous accumulates

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Commits on Jul 30, 2019

• Merge pull request open-mpi#6845 from brminich/tuned_all2all_select-v4.0.x

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Commits on Aug 2, 2019

• Merge pull request open-mpi#6846 from nysal/topic/v4.0.x/ucx_accumulate_fix

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• Merge pull request open-mpi#6838 from ggouaillardet/topic/v4.0.x/misc_fortran_bindings

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Commits on Aug 5, 2019

• Fix incorrect behavior with length == 0

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• Optimized datatype description.

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• Update the datatype dump to match the actual types.

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• Optimize the raw representation.

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• Small improvements on the test.

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• Clean and sync the pack and unpack functions.

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• Disable checksum.

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• Optimize the position placement.

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• Rework the datatype commit.

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• Get rid of the division in the critical path.

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• Optimize the pack/unpack.

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Commits on Aug 7, 2019

• Allow individual jobs to set their map/rank/bind policies

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• Fix typos

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Commits on Aug 8, 2019

• Merge pull request open-mpi#6874 from rhc54/cmr40/lsf

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Commits on Aug 9, 2019

• UCX: added PPN hint for UCX context

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• Merge pull request open-mpi#6882 from hoopoepg/topic/ucx-ppn-hint-v4.0

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• Update PMIx to official v3.1.4 release

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Commits on Aug 12, 2019

• coll/libnbc: fixes ompi ompi_coll_libnbc_request_t parent

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• coll/base: cleanup ompi_coll_base_nbc_request_t elements

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• coll/base: only retain datatypes/op if the request has not yet completed

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• osc/ucx: Fix possible win creation/destruction race condition

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• Merge pull request open-mpi#6885 from rhc54/cmr40/pmix314

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• Provide locality for all procs on node

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• Silence Coverity warning

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Commits on Aug 16, 2019

• io_ompio_file_open: fix offset calculation with SEEK_END

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• Fix the stack displacement.

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• Fix the variable names used for the datatype dump.

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• Whitespace cleanup

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Commits on Aug 19, 2019

• Merge pull request open-mpi#6889 from ggouaillardet/topic/v4.0.x/nbc_fixes

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• Merge pull request open-mpi#6892 from janjust/v4.0.x-osc_fix

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• Merge pull request open-mpi#6865 from rhc54/cmr40/locality

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• Run-as-root env vars in orterun.c

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• orterun: remove duplicate code

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Commits on Aug 20, 2019

• Merge pull request open-mpi#6911 from jsquyres/pr/v4.0/mpirun-as-root-as-containers-env-var-fix

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Commits on Aug 21, 2019

• Merge pull request open-mpi#6863 from bosilca/topic/backport_6695

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Commits on Aug 22, 2019

• SPML/UCX: fixed hang in SHMEM_FINALIZE

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• SPML/UCX: fixed comment

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Commits on Aug 23, 2019

• Merge pull request open-mpi#6905 from edgargabriel/pr/file-seek-end-fix-v4.0.x

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Commits on Aug 24, 2019

• Updating VERSION for v4.0.2rc1

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Commits on Aug 26, 2019

• Merge pull request open-mpi#6922 from hoopoepg/topic/fixed-hand-on-shmem-finalize-v4.0

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• v4.0.x: regx/naive: add regx/naive component

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• Updating NEWS for v4.0.2

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• Merge pull request open-mpi#6925 from gpaulsen/v4.0.x_VERSION_rc1

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• Merge pull request open-mpi#6926 from gpaulsen/v4.0.2_NEWS

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Commits on Aug 27, 2019

• Remove unnecessary error log

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• Coll/hcoll: fixes hcoll non-blocking colls support

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• Update OPAL DDT variable names

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• Merge pull request open-mpi#6935 from vspetrov/v4.0.x_coll_hcoll_nbc_request_bugfix

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• UCX osc: properly release exclusive lock to avoid lockup

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• Merge pull request open-mpi#6938 from jsquyres/pr/v4.0.x/fix-ddt-variable-names-in-make-check

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• Merge pull request open-mpi#6934 from devreal/osc-ucx-excl-lock-v4.0.x

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• Fix tree spawn routed component issue

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• Fix mmap infinite recurse in memory patcher

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• Merge pull request open-mpi#6915 from sam6258/smiller_regx_none

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• Merge pull request open-mpi#6946 from hkuno/intercept_mmap_fix

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• Merge pull request open-mpi#6929 from rhc54/cmr40/pmix314

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• Fix osc sm posts when only 32 bit atomics support

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• Merge pull request open-mpi#6942 from guserav/v4-fix-osc-sm-post-32-bit-atomics

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• Small optimization on the datatype commit.

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• Add a test for datatypes composed by multiple predefined

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• Be a little less restrictive on interface requirements

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• Merge pull request open-mpi#6967 from rhc54/cmr40x/oob

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• Merge pull request open-mpi#6952 from jsquyres/pr/v4.0.x/ddt-opt-and-fix

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• Merge pull request open-mpi#6944 from jjhursey/v4/fix-tree-launch

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• Reving VERSION to v4.0.2rc2

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• Merge pull request open-mpi#6969 from gpaulsen/topic/v4.0.x_VERSION_rc2

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• WIP: carry Tau memory_instrumentation bits to master

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• update to new opal_infosubscriber_t structure

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• move profile funcs/stubs out to memprof file

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• use macros in code and add comments + fix include

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• fix bad merge to avoid old header include

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