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fix SNT urls
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* manual fix after cherry picking e8ab101 (part of 1.8.23 for CRAN)
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jefferis committed Aug 26, 2023
1 parent 9d2aca8 commit 1d161fa
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3 changes: 2 additions & 1 deletion R/neuron-io-fiji.R
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Expand Up @@ -75,7 +75,8 @@ read.fijixml<-function(f, components=c("path", "fill"), ..., Verbose=FALSE){
#' information for a skeleton by shooting rays from skeleton to mesh to
#' estimate the radius.
#'
#' @references \url{ https://imagej.net/plugins/simple-neurite-tracer/}
#' @references \url{https://imagej.net/plugins/snt/}
#' \url{https://imagej.net/plugins/snt/extending}
#' @export
#'
#' @examples
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7 changes: 3 additions & 4 deletions R/neuron-io.R
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Expand Up @@ -15,8 +15,8 @@
#' \item \bold{neuroml} See \code{\link{read.neuron.neuroml}}
#'
#' \item \bold{fijitraces} See \code{\link{read.neuron.fiji}}. The file format
#' used by the \href{ https://imagej.net/plugins/simple-neurite-tracer/}{Simple Neurite
#' Tracer} plugin of Fiji/ImageJ.
#' used by the \href{https://imagej.net/plugins/snt/}{SNT} plugin of
#' Fiji/ImageJ.
#'
#' \item \bold{hxlineset,hxskel} Two distinct fileformats used by Amira.
#' \code{hxlineset} is the generic one, \code{hxskel} is used by the
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#' @references Schmitt, S. and Evers, J. F. and Duch, C. and Scholz, M. and
#' Obermayer, K. (2004). New methods for the computer-assisted 3-D
#' reconstruction of neurons from confocal image stacks. Neuroimage 4,
#' 1283--98.
#' \doi{10.1016/j.neuroimage.2004.06.047}
#' 1283--98. \doi{10.1016/j.neuroimage.2004.06.047}
#'
#' @examples
#' \dontrun{
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7 changes: 3 additions & 4 deletions man/read.neuron.Rd

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3 changes: 2 additions & 1 deletion man/read.neuron.fiji.Rd

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