convert fastq.gz.zip to fastq.zip
Clone this repo in your Galaxy Tools directory:
git clone https://github.com/naturalis/galaxy-tool-gz-decompress
Make sure the script is executable:
chmod 755 galaxy-tool-gz-decompress/gz-decomp.sh
Append the file tool_conf.xml:
<tool file="/path/to/Tools/galaxy-tool-gz-decompress/gz-decomp.xml" />
Depending on your setup the ansible.builtin.git module could be used.
Install the tool by including the following in your dedicated *.yml file:
- repo: https://github.com/naturalis/galaxy-tool-gz-decompress
file: gz-decomp.xml
version: master