Install Fail : CMake Error at cmake/Torch.cmake:416 (target_link_libraries)

[HaoDreamlong]

Issue Report

Install Fail

Please describe the issue:

Installing Dorado in Nvidia docker:
https://docs.nvidia.com/deeplearning/frameworks/pytorch-release-notes/rel_20-07.html#rel_20-07

Error Info:
'''
-- Configuring done (3.0s)
CMake Error at cmake/Torch.cmake:416 (target_link_libraries):
The link interface of target "torch_lib" contains:

CUDA::cublas_static

but the target was not found. Possible reasons include:

* There is a typo in the target name.
* A find_package call is missing for an IMPORTED target.
* An ALIAS target is missing.

Call Stack (most recent call first):
CMakeLists.txt:87 (include)

-- Generating done (0.2s)
Please provide a clear and concise description of the issue you are seeing and the result you expect.
'''

Steps to reproduce the issue:

Please list any steps to reproduce the issue.

Run environment:

• Dorado version:
• Dorado command:
• Operating system:
• Hardware (CPUs, Memory, GPUs):
• Source data type (e.g., pod5 or fast5 - please note we always recommend converting to pod5 for optimal basecalling performance):
• Source data location (on device or networked drive - NFS, etc.):
• Details about data (flow cell, kit, read lengths, number of reads, total dataset size in MB/GB/TB):
• Dataset to reproduce, if applicable (small subset of data to share as a pod5 to reproduce the issue):

Logs

• Please provide output trace of dorado (run dorado with -v, or -vv on a small subset)

[malton-ont]

@HaoDreamlong,

That docker container looks to use CUDA 11.0 - dorado requires CUDA 11.8 (see here). You could try nvidia/cuda:11.8-devel-centos7 or nvidia/cuda:11.8-devel-ubuntu20.04. Ensure that you install the other required dependencies in there as well.