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noelTexturesPy_wrapper

Simple Singularity-based wrapper for https://github.com/NOEL-MNI/noelTexturesPy

Uses antsPy U-net brainmasking, ANTS N4, ANTS, atropos tissue segmentation

Example usage:

./noelTexturesPy.sh 013 sub-013_bids/sub-P013_ses-pre_acq-FSPGR_run-02_T1w.nii.gz  sub-013_bids/sub-P013_ses-pre_acq-Cor_run-01_FLAIR.nii.gz output_texture_maps

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Singularity wrapper for noelTexturesPy

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  • Python 72.2%
  • Shell 27.8%