shared_frameshift_neoantigen

This pipeline is design to predict neoantigens derived from frameshift mutations predicted by TCGA consortia.

Requirements:

Configuration of the frameshift.config file:

Job submition via qsub:

Details coming soon.

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
README.md		README.md
frameshift-make-genelist.sh		frameshift-make-genelist.sh
frameshift.biomart-get-sequence.R		frameshift.biomart-get-sequence.R
frameshift.cdna-to-peptide.py		frameshift.cdna-to-peptide.py
frameshift.config		frameshift.config
frameshift.get-coordinate.py		frameshift.get-coordinate.py
frameshift.make-genelist.sh		frameshift.make-genelist.sh
frameshift.peptide-to-neoantigen.all.py		frameshift.peptide-to-neoantigen.all.py
frameshift.peptide-to-neoantigen.py		frameshift.peptide-to-neoantigen.py
frameshift.predict-neoantigen.qsub.sh		frameshift.predict-neoantigen.qsub.sh

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