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vcf2maf v1.6.17

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@Zuojian-Tang Zuojian-Tang released this 22 Apr 22:45
  • Added arg --retain-fmt to vcf2maf, which retains FORMAT fields
  • Fixed handling of allele depths in vcf2maf, for Strelka indels
  • In maf2vcf, feed samtools faidx 5k regions at a time, not 50k
  • Fix: maf2maf is told --filter-vcf=0, but vcf2maf did not know