vcf2maf v1.6.17
- Added arg
--retain-fmt
to vcf2maf, which retainsFORMAT
fields - Fixed handling of allele depths in vcf2maf, for Strelka indels
- In maf2vcf, feed samtools faidx 5k regions at a time, not 50k
- Fix: maf2maf is told
--filter-vcf=0
, but vcf2maf did not know