This repo contains Dockerfiles and other artifacts for building docker images for various third-party tools used in MIND.
QuPath is a package for working with WSI pathology data. Stardist is a cell-segmentation model.
The Digital Slide Archive DSA is a platform for visualizing and annotating whole-slide pathology images.
Apache Hive is a distributed data warehouse system, built on top of Apache Hadoop.
Common configurations needed for proper integration to be stored in /conf