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ProtGraph Version 0.3.10#69

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Luxxii merged 19 commits intompc-bioinformatics:mastermpc-bioinformatics/ProtGraph:masterfrom Luxxii:masterLuxxii/ProtGraph:masterCopy head branch name to clipboardJan 28, 2024

+8,770-267

Commits

Commits on Jan 26, 2024

• Rewritten compacting of FASTAs to also work memory efficient on very large FASTAs

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• Added more information to -qs

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• Fixed mpc-bioinformatics#68 , we also now consider IDs if they are available in those features

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• Fixes mpc-bioinformatics#66. We now allow as in the features to select to be added in the graph, the features to be used for counting.

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• Enhancing mpc-bioinformatics#66, we also are now able to set a limit on variable or fixed modifications

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• Changed version in apsw to be more explicit (closes mpc-bioinformatics#49), removed if-main in script

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• Bumped Version to 0.3.10

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• Extended PTMs to allow multiple at once (untested) mpc-bioinformatics#67

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• Added protein n/c-term ptms, still needs testing if graphs are correctly generated. mpc-bioinformatics#67

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• Finished PTMs on ProteinGraphs.

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• Fixed qualifier generation error. Now N/C-PEP/PRO-Term PTMs are annotated correctly in the FASTA-Header

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• Updated Tests and CLI-Documentation

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• Append PTMs to also allow only N/CTerminal AA Varbiable Modification

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• Safety Check on Fixed Mods, here N/C-Terminal AAs mods are note allows

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• Fixed Syntax

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• Added cases to also handle empty cells with less exceptions

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• Linting

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• Updated Tests, added python 3.11 and 3.12 tests

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• Removed blank line

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