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Improve header consistency for better machine parsing #102

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valentynbez opened this issue Nov 14, 2022 · 0 comments
Open

Improve header consistency for better machine parsing #102

valentynbez opened this issue Nov 14, 2022 · 0 comments
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enhancement New feature or request next version

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@valentynbez
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valentynbez commented Nov 14, 2022

Example headers:

# motus version 3.0.3 | merge 3.0.3 | info merged profiles: # git tag version 3.0.3 |  motus version 3.0.3 | map_tax 3.0.3 | gene database: nr3.0.3 | calc_mgc 3.0.3 -y insert.scaled_counts -l 75 | calc_motu 3.0.3 -k mOTU -C no_CAMI -g 3 -c | taxonomy: ref_mOTU_3.0.3 meta_mOTU_3.0.3 
# call: python /nfs/cds-peta/exports/biol_micro_cds_gr_sunagawa/scratch/vbezshapkin/conda-envs/qiime2/bin/motus merge -i A.motus,B.motus -o paired-end.motus
  • Additional # in the first line before git tag should be removed
  • Separators are different on both lines (mix of :, , | & _), and it would be convenient to parse version info + call command and params simultaneously.
@AlessioMilanese AlessioMilanese added the enhancement New feature or request label Dec 23, 2022
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