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point to bioconda and biocontainer #131

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8 changes: 7 additions & 1 deletion README.md
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Expand Up @@ -73,7 +73,7 @@ The SPAdes assembler prior to version 3.15.4 is incompatible with Python 3.10 an
We strongly recommend installing HybPiper using [conda](https://docs.conda.io/en/latest/miniconda.html) with a new environment. This will install HybPiper, all required Python packages, and all required external programs. If you have conda installed and the channels `bioconda` and `conda-forge` have already been added, this can be done using the command:

```
conda create -n hybpiper -c chrisjackson-pellicle hybpiper
conda create -n hybpiper -c bioconda hybpiper
```

...followed by:
Expand All @@ -82,6 +82,12 @@ conda create -n hybpiper -c chrisjackson-pellicle hybpiper
conda activate hybpiper
```

HybPiper is also available as a [biocontainer](https://quay.io/repository/biocontainers/hybpiper?tab=tags), and can be run using Singularity (Apptainer) or Docker.

```bash
apptainer pull docker://quay.io/biocontainers/hybpiper:2.1.6--h031d066_0
```

For full installation instructions, please see our wiki page:

[https://github.com/mossmatters/HybPiper/wiki/Installation](https://github.com/mossmatters/HybPiper/wiki/Installation)
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