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  1. CellOracle CellOracle Public

    This is the alpha version of the CellOracle package

    Python 317 56

  2. Capybara Capybara Public

    Capybara: A computational tool to measure cell identity and fate transitions

    R 57 9

  3. BiddyetalWorkflow BiddyetalWorkflow Public

    This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.

    R 30 10

  4. CellTagR CellTagR Public

    This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.

    R 20 8

  5. Colony-counter Colony-counter Public

    Python package for the quantificatin of number of colonies

    Jupyter Notebook 17 11

  6. newCloneCalling newCloneCalling Public

    Repository detailing updated allowlisting and clonal analysis workflow

    Python 8

Repositories

Showing 10 of 16 repositories
  • CellOracle Public

    This is the alpha version of the CellOracle package

    morris-lab/CellOracle’s past year of commit activity
    Python 317 56 69 2 Updated Nov 15, 2024
  • BiddyetalWorkflow Public

    This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.

    morris-lab/BiddyetalWorkflow’s past year of commit activity
    R 30 10 1 0 Updated Jun 24, 2024
  • adipogenesis-reproducibility-repo Public

    Relevant data and code for reproducing analysis of in vivo lineage tracing adipocyte precursors in skin

    morris-lab/adipogenesis-reproducibility-repo’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jun 14, 2024
  • CellOracle_streamlit Public

    Codes for celloracle web application

    morris-lab/CellOracle_streamlit’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Jun 7, 2024
  • Colony-counter Public

    Python package for the quantificatin of number of colonies

    morris-lab/Colony-counter’s past year of commit activity
    Jupyter Notebook 17 BSD-2-Clause 11 1 0 Updated Apr 10, 2024
  • CellOracle.documentation Public
    morris-lab/CellOracle.documentation’s past year of commit activity
    Jupyter Notebook 3 0 1 0 Updated Apr 2, 2024
  • newCloneCalling Public

    Repository detailing updated allowlisting and clonal analysis workflow

    morris-lab/newCloneCalling’s past year of commit activity
    Python 8 0 1 0 Updated Oct 25, 2023
  • CellTag-multi-2023 Public

    Repository for scirpts to re-produce all major analyses in the CellTag-multi paper

    morris-lab/CellTag-multi-2023’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Oct 18, 2023
  • CellTag-Titration Public

    Imaging-based titration software for GFP-Celltag lentivirus

    morris-lab/CellTag-Titration’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 19, 2023
  • CellTagR Public

    This repository contains the CellTag data analysis R package to support clone calling and lineage reconstruction.

    morris-lab/CellTagR’s past year of commit activity
    R 20 8 4 0 Updated Oct 19, 2022
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