Add new breed classifications and breeds for Cellosaurus request

Closes #187 Addresses #181
monarch-initiative · Aug 7, 2024 · db72679 · db72679
1 parent 3d21a28
commit db72679
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Showing 10 changed files with 2,349 additions and 33 deletions.
diff --git a/src/ontology/components/highlevelclass.owl b/src/ontology/components/highlevelclass.owl
diff --git a/src/ontology/components/highlevelclass.tsv b/src/ontology/components/highlevelclass.tsv
diff --git a/src/ontology/components/livestockbreeds.owl b/src/ontology/components/livestockbreeds.owl
diff --git a/src/ontology/components/livestockbreeds.tsv b/src/ontology/components/livestockbreeds.tsv
diff --git a/src/ontology/imports/cob_import.owl b/src/ontology/imports/cob_import.owl
@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/vbo/imports/cob_import.owl>
-<http://purl.obolibrary.org/obo/vbo/releases/2024-05-08/imports/cob_import.owl>
+<http://purl.obolibrary.org/obo/vbo/releases/2024-08-06/imports/cob_import.owl>
 Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/cob/releases/2023-11-16/cob.owl>)
-Annotation(owl:versionInfo "2024-05-08")
+Annotation(owl:versionInfo "2024-08-06")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000015>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000016>))
@@ -294,5 +294,7 @@ SubClassOf(<http://purl.obolibrary.org/obo/IAO_0000027> <http://purl.obolibrary.
 AnnotationAssertion(rdfs:comment <http://purl.obolibrary.org/obo/IAO_0000030> "Pier: 'data, information or knowledge'. OR 'representation")
 AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000030> "information")
 SubClassOf(<http://purl.obolibrary.org/obo/IAO_0000030> ObjectSomeValuesFrom(<http://purl.obolibrary.org/obo/IAO_0000136> owl:Thing))
+SubClassOf(<http://purl.obolibrary.org/obo/IAO_0000030> ObjectSomeValuesFrom(ObjectInverseOf(<http://purl.obolibrary.org/obo/COB_0000078>) <http://purl.obolibrary.org/obo/COB_0000120>))
+
 
 )
diff --git a/src/ontology/imports/ncbitaxon_import.owl b/src/ontology/imports/ncbitaxon_import.owl
diff --git a/src/ontology/imports/ncbitaxon_terms.txt b/src/ontology/imports/ncbitaxon_terms.txt
@@ -38,4 +38,14 @@ http://purl.obolibrary.org/obo/NCBITaxon_10042
 http://purl.obolibrary.org/obo/NCBITaxon_37174
 http://purl.obolibrary.org/obo/NCBITaxon_9685
 http://purl.obolibrary.org/obo/NCBITaxon_61376
-http://purl.obolibrary.org/obo/NCBITaxon_2576912
+http://purl.obolibrary.org/obo/NCBITaxon_2576912
+http://purl.obolibrary.org/obo/NCBITaxon_59729
+http://purl.obolibrary.org/obo/NCBITaxon_10036
+http://purl.obolibrary.org/obo/NCBITaxon_186623
+http://purl.obolibrary.org/obo/NCBITaxon_8022
+http://purl.obolibrary.org/obo/NCBITaxon_7955
+http://purl.obolibrary.org/obo/NCBITaxon_7962
+http://purl.obolibrary.org/obo/NCBITaxon_7957
+http://purl.obolibrary.org/obo/NCBITaxon_8090
+http://purl.obolibrary.org/obo/NCBITaxon_8353
+http://purl.obolibrary.org/obo/NCBITaxon_8364
diff --git a/src/ontology/imports/omo_import.owl b/src/ontology/imports/omo_import.owl
@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/vbo/imports/omo_import.owl>
-<http://purl.obolibrary.org/obo/vbo/releases/2024-05-08/imports/omo_import.owl>
+<http://purl.obolibrary.org/obo/vbo/releases/2024-08-06/imports/omo_import.owl>
 Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/omo/releases/2023-11-02/omo.owl>)
-Annotation(owl:versionInfo "2024-05-08")
+Annotation(owl:versionInfo "2024-08-06")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000031>))
 Declaration(Class(<http://purl.obolibrary.org/obo/IAO_0000027>))

diff --git a/src/ontology/imports/ro_import.owl b/src/ontology/imports/ro_import.owl
@@ -7,9 +7,9 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)
 
 
 Ontology(<http://purl.obolibrary.org/obo/vbo/imports/ro_import.owl>
-<http://purl.obolibrary.org/obo/vbo/releases/2024-05-08/imports/ro_import.owl>
+<http://purl.obolibrary.org/obo/vbo/releases/2024-08-06/imports/ro_import.owl>
 Annotation(<http://purl.org/dc/elements/1.1/source> <http://purl.obolibrary.org/obo/ro/releases/2024-04-24/ro.owl>)
-Annotation(owl:versionInfo "2024-05-08")
+Annotation(owl:versionInfo "2024-08-06")
 
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000002>))
 Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000003>))

diff --git a/src/ontology/imports/wikidata_import.owl b/src/ontology/imports/wikidata_import.owl
@@ -7,12 +7,12 @@
      xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
      xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#">
     <owl:Ontology rdf:about="http://purl.obolibrary.org/obo/vbo/imports/wikidata_import.owl">
-        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vbo/releases/2024-05-08/imports/wikidata_import.owl"/>
-        <owl:versionInfo>2024-05-08</owl:versionInfo>
+        <owl:versionIRI rdf:resource="http://purl.obolibrary.org/obo/vbo/releases/2024-08-06/imports/wikidata_import.owl"/>
+        <owl:versionInfo>2024-08-06</owl:versionInfo>
     </owl:Ontology>
 </rdf:RDF>
 
 
 
-<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi -->
+<!-- Generated by the OWL API (version 4.5.29) https://github.com/owlcs/owlapi -->