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NTRs and priority issues
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Closes #183, #179, #177.

Addresses #181
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@katiermullen
katiermullen committed Jul 29, 2024
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18 changes: 9 additions & 9 deletions src/ontology/components/breedstatus.owl
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/VBO_0300001">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/VBO_0300000"/>
<obo:IAO_0000115>Breed status refering to the level of recognition of a group of animal as a breed by an international breed organization.</obo:IAO_0000115>
<obo:IAO_0000115>Breed status refering to the level of recognition of a group of animal as a breed by an international breed registration body.</obo:IAO_0000115>
<rdfs:label>recognition status</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/VBO_0300001"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Breed status refering to the level of recognition of a group of animal as a breed by an international breed organization.</owl:annotatedTarget>
<owl:annotatedTarget>Breed status refering to the level of recognition of a group of animal as a breed by an international breed registration body.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-4142-7153</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-5002-8648</oboInOwl:hasDbXref>
</owl:Axiom>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/VBO_0300002">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/VBO_0300001"/>
<obo:IAO_0000115>Breed recognition status referring to a breed recognized by an international organization. This status also refers to breeds that are eligible to compete in championship classes. </obo:IAO_0000115>
<obo:IAO_0000115>Breed recognition status referring to a breed recognized by an international breed registration body. This status also refers to breeds that are eligible to compete in championship classes. </obo:IAO_0000115>
<rdfs:label>fully recognized breed</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/VBO_0300002"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Breed recognition status referring to a breed recognized by an international organization. This status also refers to breeds that are eligible to compete in championship classes. </owl:annotatedTarget>
<owl:annotatedTarget>Breed recognition status referring to a breed recognized by an international breed registration body. This status also refers to breeds that are eligible to compete in championship classes. </owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-4142-7153</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-5002-8648</oboInOwl:hasDbXref>
</owl:Axiom>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/VBO_0300003">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/VBO_0300001"/>
<obo:IAO_0000115>Breed recognition status referring to a breed that is in the process of becoming fully recognized by an international organization. This status is given to breeds which are preliminarily or provisionally recognized.</obo:IAO_0000115>
<obo:IAO_0000115>Breed recognition status referring to a breed that is in the process of becoming fully recognized by an international breed registration body. This status is given to breeds which are preliminarily or provisionally recognized.</obo:IAO_0000115>
<rdfs:label>partially recognized breed</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/VBO_0300003"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Breed recognition status referring to a breed that is in the process of becoming fully recognized by an international organization. This status is given to breeds which are preliminarily or provisionally recognized.</owl:annotatedTarget>
<owl:annotatedTarget>Breed recognition status referring to a breed that is in the process of becoming fully recognized by an international breed registration body. This status is given to breeds which are preliminarily or provisionally recognized.</owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-4142-7153</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-5002-8648</oboInOwl:hasDbXref>
</owl:Axiom>
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/VBO_0300004">
<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/VBO_0300001"/>
<obo:IAO_0000115>Breed recognition status referring to a breed that is reported by an international organization but not recognized. </obo:IAO_0000115>
<obo:IAO_0000115>Breed recognition status referring to a breed that is reported by an international breed registration body but not recognized. </obo:IAO_0000115>
<rdfs:label>not recognized breed</rdfs:label>
</owl:Class>
<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/VBO_0300004"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
<owl:annotatedTarget>Breed recognition status referring to a breed that is reported by an international organization but not recognized. </owl:annotatedTarget>
<owl:annotatedTarget>Breed recognition status referring to a breed that is reported by an international breed registration body but not recognized. </owl:annotatedTarget>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-4142-7153</oboInOwl:hasDbXref>
<oboInOwl:hasDbXref>https://orcid.org/0000-0002-5002-8648</oboInOwl:hasDbXref>
</owl:Axiom>
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<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi -->
<!-- Generated by the OWL API (version 4.5.29) https://github.com/owlcs/owlapi -->

8 changes: 4 additions & 4 deletions src/ontology/components/breedstatus.tsv
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VBO id Breed name Parent ID NCBITaxon: Definition Definition Xref Comment
ID LABEL SC % A IAO:0000115 >A oboInOwl:hasDbXref SPLIT=| A rdfs:comment
VBO:0300000 breed status
VBO:0300001 recognition status VBO:0300000 Breed status refering to the level of recognition of a group of animal as a breed by an international breed organization. https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5002-8648
VBO:0300002 fully recognized breed VBO:0300001 Breed recognition status referring to a breed recognized by an international organization. This status also refers to breeds that are eligible to compete in championship classes. https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5002-8648
VBO:0300003 partially recognized breed VBO:0300001 Breed recognition status referring to a breed that is in the process of becoming fully recognized by an international organization. This status is given to breeds which are preliminarily or provisionally recognized. https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5002-8648
VBO:0300004 not recognized breed VBO:0300001 Breed recognition status referring to a breed that is reported by an international organization but not recognized. https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5002-8648
VBO:0300001 recognition status VBO:0300000 Breed status refering to the level of recognition of a group of animal as a breed by an international breed registration body. https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5002-8648
VBO:0300002 fully recognized breed VBO:0300001 Breed recognition status referring to a breed recognized by an international breed registration body. This status also refers to breeds that are eligible to compete in championship classes. https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5002-8648
VBO:0300003 partially recognized breed VBO:0300001 Breed recognition status referring to a breed that is in the process of becoming fully recognized by an international breed registration body. This status is given to breeds which are preliminarily or provisionally recognized. https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5002-8648
VBO:0300004 not recognized breed VBO:0300001 Breed recognition status referring to a breed that is reported by an international breed registration body but not recognized. https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5002-8648
VBO:0300005 domestication status VBO:0300000 Breed status refering to the level of domestication of a group of animals. https://orcid.org/0000-0002-4142-7153
VBO:0300006 feral breed VBO:0300005 Domestication status given to a group of animals that has been domesticated and has adapted to existence in the wild state but remains distinct from other wild individuals of the same species. https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5002-8648|https://www.fao.org/dad-is
VBO:0300007 domestic breed VBO:0300005 Domestication status given to a group of animals that has been domesticated, that is have been selectively bred and genetically adapted over generations to live alongside humans. https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5002-8648|https://www.fao.org/dad-is
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2 changes: 1 addition & 1 deletion src/ontology/components/catbreeds.owl
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<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi -->
<!-- Generated by the OWL API (version 4.5.29) https://github.com/owlcs/owlapi -->

4 changes: 2 additions & 2 deletions src/ontology/components/dadisbreedcountry.owl
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<rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/VBO_0400000"/>
<rdfs:subClassOf rdf:nodeID="genid25022"/>
<vbo:hasdomesticationstatus rdf:resource="http://purl.obolibrary.org/obo/VBO_0300007"/>
<vbo:origindescription>Natibe breed of the Bos indicus specie. There is no written record on the origin of the Khailla cattle. It is believed that these cattle (Doteli Gai) came from Doti and Dadeldhura districts.</vbo:origindescription>
<vbo:origindescription>Native breed of the Bos indicus species. There is no written record on the origin of the Khailla cattle. It is believed that these cattle (Doteli Gai) came from Doti and Dadeldhura districts.</vbo:origindescription>
<terms:contributor rdf:resource="https://orcid.org/0000-0002-4142-7153"/>
<terms:contributor rdf:resource="https://orcid.org/0000-0002-5520-6597"/>
<terms:contributor rdf:resource="https://orcid.org/0000-0002-9178-3965"/>
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<owl:Axiom>
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/VBO_0005152"/>
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/vbo#origindescription"/>
<owl:annotatedTarget>Natibe breed of the Bos indicus specie. There is no written record on the origin of the Khailla cattle. It is believed that these cattle (Doteli Gai) came from Doti and Dadeldhura districts.</owl:annotatedTarget>
<owl:annotatedTarget>Native breed of the Bos indicus species. There is no written record on the origin of the Khailla cattle. It is believed that these cattle (Doteli Gai) came from Doti and Dadeldhura districts.</owl:annotatedTarget>
<oboInOwl:source rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://www.fao.org/dad-is</oboInOwl:source>
</owl:Axiom>
<owl:Axiom>
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2 changes: 1 addition & 1 deletion src/ontology/components/dadisbreedcountry.tsv
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Expand Up @@ -3431,7 +3431,7 @@ VBO:0005148 Telemarkfe, Norway (Cattle) Telemarkfe, Norway Cattle NCBITaxon:
VBO:0005149 Vestlandsk fjordfe, Norway (Cattle) Vestlandsk fjordfe, Norway Cattle NCBITaxon:9913 https://www.fao.org/dad-is VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 VBO:0017011 https://orcid.org/0000-0002-9178-3965 Vestlandsk fjordfe http://purl.obolibrary.org/obo/vbo#most_common_name https://www.fao.org/dad-is Western Fjord Cattle https://www.fao.org/dad-is https://www.fao.org/dad-is https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-9178-3965 Developed in the western fjord areas of Norway, based on local animals, during the last period of the nineteenth century. https://www.fao.org/dad-is VBO:0300007 https://www.fao.org/dad-is wikidata:Q20 wikidata:Q20 https://www.fao.org/dad-is Vestlandsk fjordfe Norway Cattle NOR
VBO:0005150 Vestlandsk raudkolle, Norway (Cattle) Vestlandsk raudkolle, Norway Cattle NCBITaxon:9913 https://www.fao.org/dad-is VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 VBO:0017012 https://orcid.org/0000-0002-9178-3965 Vestlandsk raudkolle http://purl.obolibrary.org/obo/vbo#most_common_name https://www.fao.org/dad-is Western Red Polled Cattle https://www.fao.org/dad-is sør- og vestlandsfe https://www.fao.org/dad-is https://www.fao.org/dad-is https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-9178-3965 Developed in the western part of Norway during the 1880`s and -90`s. https://www.fao.org/dad-is VBO:0300007 https://www.fao.org/dad-is wikidata:Q20 wikidata:Q20 https://www.fao.org/dad-is Vestlandsk raudkolle Norway Cattle NOR
VBO:0005151 Achhami, Nepal (Cattle) Achhami, Nepal Cattle NCBITaxon:9913 https://www.fao.org/dad-is VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Achhami http://purl.obolibrary.org/obo/vbo#most_common_name https://www.fao.org/dad-is Acchami https://www.fao.org/dad-is Naumuthe Gai https://www.fao.org/dad-is Sano gai https://www.fao.org/dad-is https://www.fao.org/dad-is https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-9178-3965 This is a indigenous breed of Nepal. https://www.fao.org/dad-is VBO:0300007 https://www.fao.org/dad-is wikidata:Q837 wikidata:Q837 https://www.fao.org/dad-is Achhami Nepal Cattle NPL
VBO:0005152 Khaila, Nepal (Cattle) Khaila, Nepal Cattle NCBITaxon:9913 https://www.fao.org/dad-is VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Khaila http://purl.obolibrary.org/obo/vbo#most_common_name https://www.fao.org/dad-is https://www.fao.org/dad-is https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-9178-3965 Natibe breed of the Bos indicus specie. There is no written record on the origin of the Khailla cattle. It is believed that these cattle (Doteli Gai) came from Doti and Dadeldhura districts. https://www.fao.org/dad-is VBO:0300007 https://www.fao.org/dad-is wikidata:Q837 wikidata:Q837 https://www.fao.org/dad-is Khaila Nepal Cattle NPL
VBO:0005152 Khaila, Nepal (Cattle) Khaila, Nepal Cattle NCBITaxon:9913 https://www.fao.org/dad-is VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Khaila http://purl.obolibrary.org/obo/vbo#most_common_name https://www.fao.org/dad-is https://www.fao.org/dad-is https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-9178-3965 Native breed of the Bos indicus species. There is no written record on the origin of the Khailla cattle. It is believed that these cattle (Doteli Gai) came from Doti and Dadeldhura districts. https://www.fao.org/dad-is VBO:0300007 https://www.fao.org/dad-is wikidata:Q837 wikidata:Q837 https://www.fao.org/dad-is Khaila Nepal Cattle NPL
VBO:0005153 Morang, Nepal (Cattle) Morang, Nepal Cattle NCBITaxon:9913 https://www.fao.org/dad-is VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Morang http://purl.obolibrary.org/obo/vbo#most_common_name https://www.fao.org/dad-is https://www.fao.org/dad-is https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-9178-3965 hill type, similar to Purnea https://www.fao.org/dad-is VBO:0300007 https://www.fao.org/dad-is wikidata:Q837 wikidata:Q837 https://www.fao.org/dad-is Morang Nepal Cattle NPL
VBO:0005154 Pahadi, Nepal (Cattle) Pahadi, Nepal Cattle NCBITaxon:9913 https://www.fao.org/dad-is VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Pahadi http://purl.obolibrary.org/obo/vbo#most_common_name https://www.fao.org/dad-is Nepalese Hill https://www.fao.org/dad-is Nepali Hill Zebu https://www.fao.org/dad-is Pahari https://www.fao.org/dad-is Pahari Guie https://www.fao.org/dad-is Pahari Sandhe https://www.fao.org/dad-is Black Hill Zebu https://www.fao.org/dad-is https://www.fao.org/dad-is https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-9178-3965 Native breed of the Bos indicus species. https://www.fao.org/dad-is VBO:0300007 https://www.fao.org/dad-is wikidata:Q837 wikidata:Q837 https://www.fao.org/dad-is Pahadi Nepal Cattle NPL
VBO:0005155 Terai, Nepal (Cattle) Terai, Nepal Cattle NCBITaxon:9913 https://www.fao.org/dad-is VBO:0400000 https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153 Terai http://purl.obolibrary.org/obo/vbo#most_common_name https://www.fao.org/dad-is Tarai https://www.fao.org/dad-is https://www.fao.org/dad-is https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-9178-3965 Native cattle breed of the Bos indicus specie with Hariana influence. https://www.fao.org/dad-is VBO:0300007 https://www.fao.org/dad-is wikidata:Q837 wikidata:Q837 https://www.fao.org/dad-is Terai Nepal Cattle NPL
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