Update definitions

monarch-initiative · Dec 10, 2024 · 2fb4fed · 2fb4fed
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diff --git a/src/ontology/components/catbreeds.owl b/src/ontology/components/catbreeds.owl
@@ -16107,7 +16107,7 @@
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/VBO_0100262">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9685"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/VBO_0400000"/>
-        <obo:IAO_0000115>A cat derived from more than one breed of the same species. </obo:IAO_0000115>
+        <obo:IAO_0000115>A cat whose ancestry includes a combination of different breeds.</obo:IAO_0000115>
         <obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181</obo:IAO_0000233>
         <obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/65</obo:IAO_0000233>
         <terms:contributor rdf:resource="https://orcid.org/0000-0002-4142-7153"/>
@@ -16133,9 +16133,10 @@
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/VBO_0100262"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
-        <owl:annotatedTarget>A cat derived from more than one breed of the same species. </owl:annotatedTarget>
+        <owl:annotatedTarget>A cat whose ancestry includes a combination of different breeds.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>https://orcid.org/0000-0002-4142-7153</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>https://orcid.org/0000-0002-5002-8648</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>https://orcid.org/0000-0002-7356-1779</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://www.aspcapetinsurance.com/resources/mixed-breed-cat/</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>

diff --git a/src/ontology/components/catbreeds.tsv b/src/ontology/components/catbreeds.tsv
@@ -261,7 +261,7 @@ VBO:0100258	Oregon Rex (extinct) (Cat)		Oregon Rex (extinct)	Cat				NCBITaxon:96
 VBO:0100259	Altai (Cat)		Altai	Cat		240513-161	https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/161	NCBITaxon:9685			VBO:0400000		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153	Altai	http://purl.obolibrary.org/obo/vbo#most_common_name	http://messybeast.com/blue-eye-breeds.htm	PMID:38644700				Altay	http://messybeast.com/blue-eye-breeds.htm																																																											http://messybeast.com/blue-eye-breeds.htm	PMID:38644700		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597																																												
 VBO:0100260	Topaz (Cat)		Topaz	Cat		240513-161	https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/161	NCBITaxon:9685			VBO:0400000		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153	Topaz	http://purl.obolibrary.org/obo/vbo#most_common_name	http://messybeast.com/blue-eye-breeds.htm	PMID:38644700																																																																http://messybeast.com/blue-eye-breeds.htm	PMID:38644700		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597																					Altai	VBO:0100259		PMID:38644700				PMID:38644700																
 VBO:0100261	Celestial (Cat)		Celestial	Cat		240513-161	https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/161	NCBITaxon:9685			VBO:0400000		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153	Celestial	http://purl.obolibrary.org/obo/vbo#most_common_name	http://messybeast.com/blue-eye-breeds.htm	PMID:38644700																																																																http://messybeast.com/blue-eye-breeds.htm	PMID:38644700		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597																					British Longhair	VBO:0100051		PMID:38644700	British Shorthair	VBO:0100052		PMID:38644700																
-VBO:0100262	Mixed Breed (Cat)		Mixed Breed	Cat		240828-65|240828	https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/65|https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181	NCBITaxon:9685			VBO:0400000		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153	Mixed Breed	http://purl.obolibrary.org/obo/vbo#most_common_name	https://www.aspcapetinsurance.com/resources/mixed-breed-cat/					Domestic Cat	https://www.aspcapetinsurance.com/resources/mixed-breed-cat/		House Cat	https://www.aspcapetinsurance.com/resources/mixed-breed-cat/		Moggie	https://www.aspcapetinsurance.com/resources/mixed-breed-cat/					Household Pet	https://www.tica.org/breeds/browse-all-breeds|https://cfa.org/showing-a-household-pet/	Household Pet Kitten	https://www.tica.org/phocadownload/hh.pdf	Companion Cat	https://cfa.org/breeds/															A cat derived from more than one breed of the same species. 	https://www.aspcapetinsurance.com/resources/mixed-breed-cat/	https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5002-8648																										https://www.aspcapetinsurance.com/resources/mixed-breed-cat/			https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597																																												
+VBO:0100262	Mixed Breed (Cat)		Mixed Breed	Cat		240828-65|240828	https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/65|https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181	NCBITaxon:9685			VBO:0400000		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153	Mixed Breed	http://purl.obolibrary.org/obo/vbo#most_common_name	https://www.aspcapetinsurance.com/resources/mixed-breed-cat/					Domestic Cat	https://www.aspcapetinsurance.com/resources/mixed-breed-cat/		House Cat	https://www.aspcapetinsurance.com/resources/mixed-breed-cat/		Moggie	https://www.aspcapetinsurance.com/resources/mixed-breed-cat/					Household Pet	https://www.tica.org/breeds/browse-all-breeds|https://cfa.org/showing-a-household-pet/	Household Pet Kitten	https://www.tica.org/phocadownload/hh.pdf	Companion Cat	https://cfa.org/breeds/															A cat whose ancestry includes a combination of different breeds.	https://www.aspcapetinsurance.com/resources/mixed-breed-cat/	https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-7356-1779																										https://www.aspcapetinsurance.com/resources/mixed-breed-cat/			https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597																																												
 VBO:0100263	Japanese Domestic (Cat)		Japanese Domestic	Cat		240828-65|240828	https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/65|https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/181	VBO:0100262		https://orcid.org/0000-0002-5002-8648	VBO:0400000		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153	Japanese Domestic	http://purl.obolibrary.org/obo/vbo#most_common_name	https://www.jstage.jst.go.jp/article/jmammsocjapan1952/1/5/1_5_75/_article/-char/en	PMID:37458497|PMID:16872651|PMID:26234889																								JD		PMID:37458497																																						https://www.jstage.jst.go.jp/article/jmammsocjapan1952/1/5/1_5_75/_article/-char/en	PMID:37458497|PMID:16872651|PMID:26234889		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597																																												
 VBO:0100118	Domestic Longhair (Cat)		Domestic Longhair	Cat		240828-200|240828-65	https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/200|https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/65	VBO:0100262		https://orcid.org/0000-0002-5002-8648	VBO:0400000		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153	Domestic Longhair	http://purl.obolibrary.org/obo/vbo#most_common_name	https://en.wikipedia.org/wiki/Moggy|https://fifeweb.org/cats/breeds/					Domestic Long-Haired	https://en.wikipedia.org/wiki/Moggy		House Cat Longhair	https://fifeweb.org/cats/breeds/								Household Pet Longhair	https://wcf.de/en/wcf-ems-code/	Non Recognized Longhair	https://fifeweb.org/cats/ems-system/|https://wcf.de/en/wcf-ems-code/					DLH	https://en.wikipedia.org/wiki/Moggy	https://orcid.org/0000-0002-1628-7726	HCL	https://fifeweb.org/cats/breeds/								A group of cats of mixed ancestry and not belonging to any particular recognized cat breed possessing a coat of long fur. 	https://en.wikipedia.org/wiki/Moggy	https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5002-8648								VBO:0300003	https://fifeweb.org/cats/breeds/									https://fifeweb.org/cats/breeds/								https://en.wikipedia.org/wiki/Moggy		https://orcid.org/0000-0002-1628-7726	https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597																																												
 VBO:0100265	Domestic Medium Hair (Cat)		Domestic Medium Hair	Cat		240828-65	https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/65	VBO:0100262		https://orcid.org/0000-0002-5002-8648	VBO:0400000		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153	Domestic Medium Hair	http://purl.obolibrary.org/obo/vbo#most_common_name	https://www.aspcapetinsurance.com/resources/domestic-medium-hair/																									DMH		https://orcid.org/0000-0002-1628-7726										A group of cats of mixed ancestry and not belonging to any particular recognized cat breed possessing a coat of semi-long fur. 	https://en.wikipedia.org/wiki/Moggy	https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5002-8648																										https://www.aspcapetinsurance.com/resources/domestic-medium-hair/		https://orcid.org/0000-0002-1628-7726	https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597																																												

diff --git a/src/ontology/components/dogbreeds.owl b/src/ontology/components/dogbreeds.owl
@@ -56585,7 +56585,7 @@
     <owl:Class rdf:about="http://purl.obolibrary.org/obo/VBO_0200902">
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/NCBITaxon_9615"/>
         <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/VBO_0400000"/>
-        <obo:IAO_0000115>A dog derived from more than one breed of the same species.</obo:IAO_0000115>
+        <obo:IAO_0000115>A dog whose ancestry includes a combination of different breeds.</obo:IAO_0000115>
         <obo:IAO_0000233 rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/111</obo:IAO_0000233>
         <terms:contributor rdf:resource="https://orcid.org/0000-0001-7688-1770"/>
         <terms:contributor rdf:resource="https://orcid.org/0000-0002-4142-7153"/>
@@ -56608,10 +56608,11 @@
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/VBO_0200902"/>
         <owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/>
-        <owl:annotatedTarget>A dog derived from more than one breed of the same species.</owl:annotatedTarget>
+        <owl:annotatedTarget>A dog whose ancestry includes a combination of different breeds.</owl:annotatedTarget>
         <oboInOwl:hasDbXref>https://orcid.org/0000-0002-4142-7153</oboInOwl:hasDbXref>
         <oboInOwl:hasDbXref>https://orcid.org/0000-0002-5002-8648</oboInOwl:hasDbXref>
-        <oboInOwl:hasDbXref>https://venomcoding.org/venom-codes/</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref>https://orcid.org/0000-0002-7356-1779</oboInOwl:hasDbXref>
+        <oboInOwl:hasDbXref rdf:datatype="http://www.w3.org/2001/XMLSchema#anyURI">https://venomcoding.org/venom-codes/</oboInOwl:hasDbXref>
     </owl:Axiom>
     <owl:Axiom>
         <owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/VBO_0200902"/>

diff --git a/src/ontology/components/dogbreeds.tsv b/src/ontology/components/dogbreeds.tsv
@@ -42,7 +42,7 @@ VBO:0000670			Mastin del Pirineo	Dog	VBO:0200868 into VBO:0000670	230823-111
 VBO:0201278	Spanish Mastiff (Dog)		Spanish Mastiff	Dog	VBO:0200869 into VBO:0201278	230823-111		NCBITaxon:9615			VBO:0400000		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153	Spanish Mastiff	http://purl.obolibrary.org/obo/vbo#most_common_name	https://www.akc.org/dog-breeds/spanish-mastiff/|https://www.fci.be/en/nomenclature/SPANISH-MASTIFF-91.html|https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=229|https://www.ukcdogs.com/spanish-mastiff|https://venomcoding.org/venom-codes/|https://en.wikipedia.org/wiki/Spanish_Mastiff					Mastín Español	https://www.fci.be/en/nomenclature/SPANISH-MASTIFF-91.html		Mastín español de campo y trabajo	https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=229		Mastín ganadero	https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=229		Mastín Leonés	https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=229		Mastín Extremeño	https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=229		Mastiff - Spanish	https://venomcoding.org/venom-codes/																																								FCI:91	https://www.fci.be/en/nomenclature/SPANISH-MASTIFF-91.html		iDog:229	https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=229								VeNom:14431	https://venomcoding.org/venom-codes/			VBO:0300002	https://www.fci.be/en/nomenclature/SPANISH-MASTIFF-91.html					VBO:0300004	https://www.akc.org/dog-breeds/spanish-mastiff/		https://www.akc.org/dog-breeds/spanish-mastiff/			https://www.fci.be/en/nomenclature/SPANISH-MASTIFF-91.html	https://ngdc.cncb.ac.cn/idog/breed/getBreedDetail.action?breedId=229			https://www.ukcdogs.com/spanish-mastiff	https://venomcoding.org/venom-codes/	https://en.wikipedia.org/wiki/Spanish_Mastiff		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-9178-3965|https://orcid.org/0000-0001-7688-1770																									
 VBO:0200869	obsolete Mastin Espanol (Dog)		Mastin Espanol	Dog	VBO:0200869 into VBO:0201278	230823-111																																																																																																						http://omia.org					https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-9178-3965|https://orcid.org/0000-0001-7688-1770		Mastin Espanol and Spanish Mastiff merged based on https://www.fci.be/en/nomenclature/SPANISH-MASTIFF-91.html.		Mastin Espanol and Spanish Mastiff merged based on https://www.fci.be/en/nomenclature/SPANISH-MASTIFF-91.html.									owl:Class	true	VBO:0201278	Spanish Mastiff (Dog)	Mastin Espanol and Spanish Mastiff merged based on https://www.fci.be/en/nomenclature/SPANISH-MASTIFF-91.html.	https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/111	terms merged						
 VBO:0201278			Mastin Espanol	Dog	VBO:0200869 into VBO:0201278	230823-111								Mastin Espanol		http://omia.org																																																		Mastin Espanol (Dog)	VBO:0200869																									OMIA:516																http://omia.org					https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-9178-3965|https://orcid.org/0000-0001-7688-1770																		https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/111							
-VBO:0200902	Mixed Breed (Dog)		Mixed Breed	Dog	VBO:0200905 into VBO:0200902	230823-111		NCBITaxon:9615			VBO:0400000		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153	Mixed Breed	http://purl.obolibrary.org/obo/vbo#most_common_name	http://omia.org																																																										A dog derived from more than one breed of the same species.		https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5002-8648|https://venomcoding.org/venom-codes/																OMIA:815|OMIA:821																http://omia.org					https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-9178-3965|https://orcid.org/0000-0001-7688-1770																									
+VBO:0200902	Mixed Breed (Dog)		Mixed Breed	Dog	VBO:0200905 into VBO:0200902	230823-111		NCBITaxon:9615			VBO:0400000		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153	Mixed Breed	http://purl.obolibrary.org/obo/vbo#most_common_name	http://omia.org																																																										A dog whose ancestry includes a combination of different breeds.	https://venomcoding.org/venom-codes/	https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-7356-1779																OMIA:815|OMIA:821																http://omia.org					https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-9178-3965|https://orcid.org/0000-0001-7688-1770																									
 VBO:0200905	obsolete Mongrel (Dog)		Mongrel	Dog	VBO:0200905 into VBO:0200902	230823-111																																																																																																						http://omia.org					https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-9178-3965|https://orcid.org/0000-0001-7688-1770													owl:Class	true	VBO:0200902	Mixed Breed (Dog)		https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/111	terms merged						
 VBO:0200902			Mongrel	Dog	VBO:0200905 into VBO:0200902	230823-111								Mongrel		http://omia.org																																																		Mongrel (Dog)	VBO:0200905																									OMIA:835																http://omia.org					https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-9178-3965|https://orcid.org/0000-0001-7688-1770																		https://github.com/monarch-initiative/vertebrate-breed-ontology/issues/111							
 VBO:0200683	Huntaway (Dog)		Huntaway	Dog	VBO:0200936 into VBO:0200683	230823-111		NCBITaxon:9615			VBO:0400000		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153	Huntaway	http://purl.obolibrary.org/obo/vbo#most_common_name	https://en.wikipedia.org/wiki/Huntaway																																																																																															https://en.wikipedia.org/wiki/Huntaway		https://orcid.org/0000-0002-5002-8648|https://orcid.org/0000-0002-4142-7153|https://orcid.org/0000-0002-5520-6597|https://orcid.org/0000-0002-9178-3965|https://orcid.org/0000-0001-7688-1770