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remove unnecessary files
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@hrshdhgd
hrshdhgd committed Aug 28, 2023
1 parent 7389930 commit 72c9cba
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Showing 2 changed files with 8 additions and 7 deletions.
5 changes: 3 additions & 2 deletions Makefile
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Original file line number Diff line number Diff line change
Expand Up @@ -22,9 +22,10 @@ tmp/mondo_edit.obo:
tmp/mondo.owl: tmp/mondo_edit.obo
robot convert -i $< --output $@

tmp/mondo.db:
tmp/mondo.db: tmp/mondo.owl
semsql make $@
rm .template.db
rm -f .template.db
rm -f tmp/mondo-relation-graph.tsv.gz

tmp/mondo_lexmatch.sssom.tsv: tmp/mondo.db
runoak -i sqlite:$< lexmatch -o $@ -R $(RULES_FILE)
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10 changes: 5 additions & 5 deletions tmp/mondo_validate_full.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -356,7 +356,7 @@ http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0000200 ERROR None obo:
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0000200 ERROR None obo:mondo#excluded_subClassOf None None None Unknown pred (obo:mondo#excluded_subClassOf) = MOP:0000508 None
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0000208 ERROR None obo:mondo#excluded_subClassOf None None None Unknown pred (obo:mondo#excluded_subClassOf) = MOP:0018320 None
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0000211 ERROR None ICEO:0000115 None None None Unknown pred (ICEO:0000115) = None An adult-onset movement disorder characterized by bradykinesia, dysarthria and muscle rigidity.
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0000212 ERROR None ICEO:0000115 None None None Unknown pred (ICEO:0000115) = None A hypercalcemia disease that occurs between 28 days to one year of life..
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0000212 ERROR None ICEO:0000115 None None None Unknown pred (ICEO:0000115) = None A hypercalcemia disease that occurs between 28 days to one year of life.
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0000212 ERROR None ICEO:0000233 None None None Unknown pred (ICEO:0000233) = None https://github.com/monarch-initiative/mondo/issues/2926
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0000212 ERROR None obo:mondo#excluded_subClassOf None None None Unknown pred (obo:mondo#excluded_subClassOf) = MOP:0019743 None
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0000218 ERROR None ICEO:0000231 None None None Unknown pred (ICEO:0000231) = OMO:0001000 None
Expand Down Expand Up @@ -549,7 +549,7 @@ http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001147 ERROR None obo:
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001149 ERROR None ICEO:0000589 None None None Unknown pred (ICEO:0000589) = None microcephaly (disease)
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001149 ERROR None obo:mondo#excluded_subClassOf None None None Unknown pred (obo:mondo#excluded_subClassOf) = MOP:0002320 None
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001150 ERROR None obo:mondo#excluded_subClassOf None None None Unknown pred (obo:mondo#excluded_subClassOf) = MOP:0005559 None
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001153 ERROR None ICEO:0006012 None None None Unknown pred (ICEO:0006012) = None 2023-09-01
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001153 ERROR None ICEO:0000231 None None None Unknown pred (ICEO:0000231) = OMO:0001000 None
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001156 ERROR None ICEO:0000589 None None None Unknown pred (ICEO:0000589) = None borderline personality disorder (disease)
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001170 ERROR None obo:mondo#excluded_subClassOf None None None Unknown pred (obo:mondo#excluded_subClassOf) = MOP:0002602 None
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001175 ERROR None obo:mondo#excluded_subClassOf None None None Unknown pred (obo:mondo#excluded_subClassOf) = MOP:0004847 None
Expand All @@ -558,14 +558,14 @@ http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001271 ERROR None ICEO
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001303 ERROR None ICEO:0000589 None None None Unknown pred (ICEO:0000589) = None abnormal pupillary function (disease)
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001306 ERROR None ICEO:0000231 None None None Unknown pred (ICEO:0000231) = OMO:0001000 None
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001319 ERROR None obo:mondo#excluded_synonym None None None Unknown pred (obo:mondo#excluded_synonym) = None Lateral Wall of bladder
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001321 ERROR None ICEO:0000231 None None None Unknown pred (ICEO:0000231) = OMO:0001000 None
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001321 ERROR None ICEO:0000589 None None None Unknown pred (ICEO:0000589) = None scleral staphyloma (disease)
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001328 ERROR None obo:mondo#excluded_from_qc_check None None None Unknown pred (obo:mondo#excluded_from_qc_check) = obo:mondo/sparql/qc/general/qc-single-child.sparql None
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001338 ERROR None obo:mondo#excluded_from_qc_check None None None Unknown pred (obo:mondo#excluded_from_qc_check) = obo:mondo/sparql/qc/general/qc-single-child.sparql None
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001342 ERROR None ICEO:0000589 None None None Unknown pred (ICEO:0000589) = None dysgammaglobulinemia (disease)
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001583 ERROR None obo:mondo#confidence None None None Unknown pred (obo:mondo#confidence) = None 0.3333333333333335
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001595 ERROR None obo:mondo#confidence None None None Unknown pred (obo:mondo#confidence) = None 0.4999999999999998
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001676 ERROR None obo:mondo#confidence None None None Unknown pred (obo:mondo#confidence) = None 0.045454545454545414
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001693 ERROR None obo:mondo#excluded_from_qc_check None None None Unknown pred (obo:mondo#excluded_from_qc_check) = obo:mondo/sparql/qc/general/qc-single-child.sparql None
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001706 ERROR None obo:mondo#excluded_from_qc_check None None None Unknown pred (obo:mondo#excluded_from_qc_check) = obo:mondo/sparql/qc/general/qc-single-child.sparql None
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0001724 ERROR None obo:mondo#excluded_synonym None None None Unknown pred (obo:mondo#excluded_synonym) = None supraglottis
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0002009 ERROR None obo:mondo#confidence None None None Unknown pred (obo:mondo#confidence) = None 0.23106060606060574
Expand Down Expand Up @@ -680,9 +680,7 @@ http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0008438 ERROR None obo:
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0008731 ERROR None obo:mondo#excluded_from_qc_check None None None Unknown pred (obo:mondo#excluded_from_qc_check) = obo:mondo/sparql/qc/mondo/qc-omim-subsumption.sparql None
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0008807 ERROR None ICEO:0006012 None None None Unknown pred (ICEO:0006012) = None 2023-10-01
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0008855 ERROR None obo:mondo#excluded_from_qc_check None None None Unknown pred (obo:mondo#excluded_from_qc_check) = MOP:0018814 None
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0008858 ERROR None obo:mondo#excluded_from_qc_check None None None Unknown pred (obo:mondo#excluded_from_qc_check) = obo:mondo/sparql/qc/general/qc-single-child.sparql None
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0010204 ERROR None ICEO:0006012 None None None Unknown pred (ICEO:0006012) = None 2023-09-01
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0011380 ERROR None ICEO:0006012 None None None Unknown pred (ICEO:0006012) = None 2023-09-01
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0011499 ERROR None ICEO:0006012 None None None Unknown pred (ICEO:0006012) = None 2023-09-01
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0011940 ERROR None ICEO:0006012 None None None Unknown pred (ICEO:0006012) = None 2022-10-01
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0013742 ERROR None ICEO:0006012 None None None Unknown pred (ICEO:0006012) = None 2023-09-01
Expand Down Expand Up @@ -723,6 +721,8 @@ http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0015334 ERROR None ICEO
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0015337 ERROR None ICEO:0006012 None None None Unknown pred (ICEO:0006012) = None 2023-10-01
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0015338 ERROR None ICEO:0006012 None None None Unknown pred (ICEO:0006012) = None 2023-09-01
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0015359 ERROR None ICEO:0006012 None None None Unknown pred (ICEO:0006012) = None 2023-09-01
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0015360 ERROR None ICEO:0006012 None None None Unknown pred (ICEO:0006012) = None 2022-09-01
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0015361 ERROR None ICEO:0006012 None None None Unknown pred (ICEO:0006012) = None 2023-09-01
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0015364 ERROR None obo:mondo#excluded_synonym None None None Unknown pred (obo:mondo#excluded_synonym) = None familial dysautonomia, type II
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0020066 ERROR None obo:mondo#excluded_synonym None None None Unknown pred (obo:mondo#excluded_synonym) = None Cutis hyperelastica
http://www.w3.org/ns/shacl#ClosedConstraintComponent MOP:0020066 ERROR None obo:mondo#excluded_synonym None None None Unknown pred (obo:mondo#excluded_synonym) = None India rubber skin
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