relocated files within config

monarch-initiative · Oct 31, 2023 · 552c54e · 552c54e
1 parent 37ae9c9
commit 552c54e
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/Makefile b/Makefile
@@ -42,11 +42,11 @@ tmp/mondo_validate_full.tsv: tmp/mondo.db
 tmp/mondo_validate.tsv: tmp/mondo_validate_full.tsv
 	$(RUN) mondoqc validate $< -o $@
 
-obsoletion_tables: tmp/mondo-relaxed-branchreview.db  tmp/mondo-reasoned-branchreview.db
-	for id in $(shell cat src/mondolib/branch_ids.tsv); do \
-        $(RUN) mondoqc create-review-table -i tmp/mondo-reasoned-branchreview.db -o tmp/mondo-reasoned-branch-$$id-review.tsv -f src/mondolib/obsoletion_terms.tsv -b $$id;\
-		$(RUN) mondoqc create-review-table -i tmp/mondo-relaxed-branchreview.db -o tmp/mondo-relaxed-branch-$$id-review.tsv -f src/mondolib/obsoletion_terms.tsv -b $$id;\
-		$(RUN) mondoqc relax-and-reason -i tmp/mondo-reasoned-branch-$$id-review.tsv -i tmp/mondo-relaxed-branch-$$id-review.tsv -r tmp/mondo-relaxed-branchreview.db   -f src/mondolib/obsoletion_terms.tsv -o reports/mondo-combined-branch-$$id-review.tsv;\
+obsoletion-tables: tmp/mondo-relaxed-branchreview.db  tmp/mondo-reasoned-branchreview.db
+	for id in $(shell cat src/mondolib/config/branch_ids.tsv); do \
+        $(RUN) mondoqc create-review-table -i tmp/mondo-reasoned-branchreview.db -o tmp/mondo-reasoned-branch-$$id-review.tsv -f src/mondolib/config/obsoletion_terms.tsv -b $$id;\
+		$(RUN) mondoqc create-review-table -i tmp/mondo-relaxed-branchreview.db -o tmp/mondo-relaxed-branch-$$id-review.tsv -f src/mondolib/config/config/obsoletion_terms.tsv -b $$id;\
+		$(RUN) mondoqc relax-and-reason -i tmp/mondo-reasoned-branch-$$id-review.tsv -i tmp/mondo-relaxed-branch-$$id-review.tsv -r tmp/mondo-relaxed-branchreview.db   -f src/mondolib/config/obsoletion_terms.tsv -o reports/mondo-combined-branch-$$id-review.tsv;\
     done
 
 lexmatch: tmp/mondo_lexmatch.sssom.tsv

diff --git a/src/mondolib/branch_ids.tsv → src/mondolib/config/branch_ids.tsv b/src/mondolib/branch_ids.tsv → src/mondolib/config/branch_ids.tsv
diff --git a/src/mondolib/obsoletion_terms.tsv → src/mondolib/config/obsoletion_terms.tsv b/src/mondolib/obsoletion_terms.tsv → src/mondolib/config/obsoletion_terms.tsv