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Build 2024-May-23 (re-run build) #542

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Build 2024-May-23 (re-run build) #542

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6 changes: 3 additions & 3 deletions docs/metrics/doid.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/doid.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-05-01/doid.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-05-23/doid.owl

### Entities and axioms

| Metric | Value |
| ------ | ----- |
| Annotation properties | 27 |
| Axioms | 115964 |
| Axioms | 115971 |
| Logical axioms | 16110 |
| Classes | 13099 |
| Object properties | 2 |
Expand All @@ -32,7 +32,7 @@

| Metric | Value |
| ------ | ----- |
| AnnotationAssertion | 86726 |
| AnnotationAssertion | 86733 |
| SubAnnotationPropertyOf | 1 |
| DisjointClasses | 26 |
| Declaration | 13127 |
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2 changes: 1 addition & 1 deletion docs/metrics/gard.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/gard.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-05-01/gard.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-05-23/gard.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/icd10cm.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10cm.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-05-01/icd10cm.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-05-23/icd10cm.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/icd10who.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd10who.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-05-01/icd10who.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-05-23/icd10who.owl

### Entities and axioms

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2 changes: 1 addition & 1 deletion docs/metrics/icd11foundation.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/icd11foundation.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-05-01/icd11foundation.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-05-23/icd11foundation.owl

### Entities and axioms

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22 changes: 11 additions & 11 deletions docs/metrics/ncit.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/ncit.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-05-01/ncit.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-05-23/ncit.owl

### Entities and axioms

| Metric | Value |
| ------ | ----- |
| Annotation properties | 12 |
| Axioms | 612685 |
| Logical axioms | 32780 |
| Classes | 15628 |
| Axioms | 623834 |
| Logical axioms | 33655 |
| Classes | 15971 |
| Object properties | 0 |
| Data properties | 0 |
| Individuals | 0 |
Expand All @@ -32,20 +32,20 @@

| Metric | Value |
| ------ | ----- |
| AnnotationAssertion | 564246 |
| EquivalentClasses | 6027 |
| AnnotationAssertion | 574177 |
| EquivalentClasses | 6260 |
| DatatypeDefinition | 19 |
| AnnotationPropertyRangeOf | 1 |
| Declaration | 15658 |
| SubClassOf | 26734 |
| Declaration | 16001 |
| SubClassOf | 27376 |


#### Entity namespaces: axiom counts by namespace

| Metric | Value |
| ------ | ----- |
| prefix_unknown | 1 |
| NCIT | 15650 |
| NCIT | 15993 |
| oboInOwl | 3 |
| owl | 2 |
| rdf | 1 |
Expand All @@ -59,8 +59,8 @@

| Metric | Value |
| ------ | ----- |
| Class | 88896 |
| ObjectIntersectionOf | 6027 |
| Class | 91288 |
| ObjectIntersectionOf | 6260 |


More information about the source can be found [in the documentation](../sources.md). The raw data (ontology metrics) can be found [on GitHub](https://github.com/monarch-initiative/mondo-ingest/tree/main/src/ontology/metadata).
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20 changes: 10 additions & 10 deletions docs/metrics/omim.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/omim.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-05-01/omim.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-05-23/omim.owl

### Entities and axioms

| Metric | Value |
| ------ | ----- |
| Annotation properties | 18 |
| Axioms | 345588 |
| Logical axioms | 22689 |
| Classes | 19482 |
| Axioms | 345890 |
| Logical axioms | 22703 |
| Classes | 19488 |
| Object properties | 7 |
| Data properties | 0 |
| Individuals | 0 |
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| Metric | Value |
| ------ | ----- |
| AnnotationAssertion | 303395 |
| AnnotationAssertion | 303677 |
| SubAnnotationPropertyOf | 1 |
| Declaration | 19503 |
| SubClassOf | 22689 |
| Declaration | 19509 |
| SubClassOf | 22703 |


#### Entity namespaces: axiom counts by namespace

| Metric | Value |
| ------ | ----- |
| prefix_unknown | 18036 |
| prefix_unknown | 18042 |
| oboInOwl | 4 |
| owl | 2 |
| xsd | 1 |
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| Metric | Value |
| ------ | ----- |
| Class | 64850 |
| ObjectSomeValuesFrom | 17792 |
| Class | 64884 |
| ObjectSomeValuesFrom | 17798 |


More information about the source can be found [in the documentation](../sources.md). The raw data (ontology metrics) can be found [on GitHub](https://github.com/monarch-initiative/mondo-ingest/tree/main/src/ontology/metadata).
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2 changes: 1 addition & 1 deletion docs/metrics/ordo.md
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**IRI:** http://purl.obolibrary.org/obo/mondo/sources/ordo.owl

**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-05-01/ordo.owl
**Version IRI:** http://purl.obolibrary.org/obo/mondo/sources/2024-05-23/ordo.owl

### Entities and axioms

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4 changes: 2 additions & 2 deletions docs/reports/mapped_deprecated.md
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| Ontology | Tot deprecated in Mondo |
|:----------------------------------------------------------|--------------------------:|
| [DOID](./mapped_deprecated_doid.md) | 5 |
| [OMIM](./mapped_deprecated_omim.md) | 45 |
| [OMIM](./mapped_deprecated_omim.md) | 46 |
| [ORDO](./mapped_deprecated_ordo.md) | 225 |
| [NCIT](./mapped_deprecated_ncit.md) | 12 |
| [NCIT](./mapped_deprecated_ncit.md) | 22 |
| [GARD](./mapped_deprecated_gard.md) | 0 |
| [ICD11FOUNDATION](./mapped_deprecated_icd11foundation.md) | 0 |
| [ICD10CM](./mapped_deprecated_icd10cm.md) | 0 |
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10 changes: 10 additions & 0 deletions docs/reports/mapped_deprecated_ncit.md
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|:--------------|:---------------------|:-------------------------|
| ID | A oboInOwl:hasDbXref | >A oboInOwl:source |
| MONDO:0002063 | NCIT:C6977 | MONDO:equivalentObsolete |
| MONDO:0002938 | NCIT:C66903 | MONDO:equivalentObsolete |
| MONDO:0003222 | NCIT:C5504 | MONDO:equivalentObsolete |
| MONDO:0003450 | NCIT:C4173 | MONDO:equivalentObsolete |
| MONDO:0003998 | NCIT:C40257 | MONDO:equivalentObsolete |
| MONDO:0004141 | NCIT:C9499 | MONDO:equivalentObsolete |
| MONDO:0004204 | NCIT:C4462 | MONDO:equivalentObsolete |
| MONDO:0004419 | NCIT:C39822 | MONDO:equivalentObsolete |
| MONDO:0004819 | NCIT:C7150 | MONDO:equivalentObsolete |
| MONDO:0005065 | NCIT:C3234 | MONDO:equivalentObsolete |
| MONDO:0005104 | NCIT:C9419 | MONDO:equivalentObsolete |
| MONDO:0005362 | NCIT:C34801 | MONDO:equivalentObsolete |
| MONDO:0005369 | NCIT:C2915 | MONDO:equivalentObsolete |
| MONDO:0006475 | NCIT:C27892 | MONDO:equivalentObsolete |
| MONDO:0013171 | NCIT:C3963 | MONDO:equivalentObsolete |
| MONDO:0015040 | NCIT:C7167 | MONDO:equivalentObsolete |
| MONDO:0015540 | NCIT:C35439 | MONDO:equivalentObsolete |
| MONDO:0016747 | NCIT:C5505 | MONDO:equivalentObsolete |
| MONDO:0017308 | NCIT:C75007 | MONDO:equivalentObsolete |
| MONDO:0020804 | NCIT:C7586 | MONDO:equivalentObsolete |
| MONDO:0020805 | NCIT:C4743 | MONDO:equivalentObsolete |
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1 change: 1 addition & 0 deletions docs/reports/mapped_deprecated_omim.md
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| MONDO:0008126 | OMIM:164891 | MONDO:equivalentObsolete |
| MONDO:0008204 | OMIM:168850 | MONDO:equivalentObsolete |
| MONDO:0008415 | OMIM:181515 | MONDO:equivalentObsolete |
| MONDO:0008873 | OMIM:210730 | MONDO:equivalentObsolete |
| MONDO:0009535 | OMIM:247440 | MONDO:equivalentObsolete |
| MONDO:0009586 | OMIM:249660 | MONDO:equivalentObsolete |
| MONDO:0009654 | OMIM:252700 | MONDO:equivalentObsolete |
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8 changes: 4 additions & 4 deletions docs/reports/migrate.md
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| Ontology | Tot |
|:------------------------------------------------|:-------|
| [GARD](./migrate_gard.md) | 9,370 |
| [DOID](./migrate_doid.md) | 56 |
| [NCIT](./migrate_ncit.md) | 2,176 |
| [DOID](./migrate_doid.md) | 8 |
| [OMIM](./migrate_omim.md) | 5 |
| [NCIT](./migrate_ncit.md) | 2,209 |
| [ICD10WHO](./migrate_icd10who.md) | 119 |
| [ORDO](./migrate_ordo.md) | 11 |
| [ICD11FOUNDATION](./migrate_icd11foundation.md) | 10,581 |
| [OMIM](./migrate_omim.md) | 10 |
| [ORDO](./migrate_ordo.md) | 10 |
| [ICD10CM](./migrate_icd10cm.md) | 1,889 |

### Codebook
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